Variant report

Variant	rs16853635
Chromosome Location	chr2:168344989-168344990
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10497325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12104575	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1227136	0.82[EUR][1000 genomes]
rs1228656	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841779	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853738	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17564763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17565731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61010982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61353392	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026021	1.00[EUR][1000 genomes]
rs7572056	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572439	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168337000-168355400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:168337200-168348200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:168338200-168348200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:168338200-168366000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr2:168338400-168349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:168338400-168352400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:168340200-168345600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:168341600-168352600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:168341600-168352800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:168341600-168365200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:168342000-168345600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:168342200-168352400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr2:168343600-168345200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr2:168343600-168347600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:168343600-168352400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:168344200-168345000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr2:168344400-168345600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr2:168344600-168345600	Weak transcription	Brain Germinal Matrix	brain
19	chr2:168344800-168345000	Enhancers	Brain Substantia Nigra	brain

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