Variant report

Variant	rs17622965
Chromosome Location	chr2:168371311-168371312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168342324..168343828-chr2:168369519..168372114,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10497325	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12104575	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1227136	0.82[EUR][1000 genomes]
rs1228656	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841779	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853738	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17564763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17565731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622284	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61010982	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61353392	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026007	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026021	1.00[EUR][1000 genomes]
rs7572056	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572439	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168366600-168384800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:168366800-168374200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:168367000-168385200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:168371200-168372000	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links