Variant report

Variant	rs73024093
Chromosome Location	chr2:168382899-168382900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10497325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12104575	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1227136	0.82[EUR][1000 genomes]
rs1228656	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16841779	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853694	0.82[AFR][1000 genomes]
rs16853707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853738	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16853749	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17564763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17565731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17622965	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195790	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61010982	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61353392	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024082	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024087	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73024096	0.96[AFR][1000 genomes]
rs73026007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026011	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026021	1.00[EUR][1000 genomes]
rs7572056	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7572439	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv834449	chr2:168340043-168511856	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv583592	chr2:168356232-168721539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv978952	chr2:168378198-168383739	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168366600-168384800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:168367000-168385200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:168379400-168414000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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