Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1503327	1.00[EUR][1000 genomes]
rs16854421	1.00[EUR][1000 genomes]
rs16854423	1.00[EUR][1000 genomes]
rs16854854	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16854880	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16854888	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16855017	1.00[EUR][1000 genomes]
rs16855023	1.00[EUR][1000 genomes]
rs16855033	1.00[EUR][1000 genomes]
rs16855089	1.00[EUR][1000 genomes]
rs2361212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4340702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56213736	1.00[EUR][1000 genomes]
rs60856776	1.00[EUR][1000 genomes]
rs60882025	1.00[EUR][1000 genomes]
rs61051212	1.00[EUR][1000 genomes]
rs61185584	1.00[EUR][1000 genomes]
rs6788745	1.00[EUR][1000 genomes]
rs6792671	1.00[EUR][1000 genomes]
rs721573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72997316	1.00[EUR][1000 genomes]
rs73871132	1.00[EUR][1000 genomes]
rs73871139	1.00[EUR][1000 genomes]
rs73871145	1.00[EUR][1000 genomes]
rs7610600	1.00[EUR][1000 genomes]
rs7633269	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143697000-143729200	Weak transcription	Aorta	Aorta
2	chr3:143699200-143737600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:143708000-143729200	Weak transcription	Ovary	ovary
4	chr3:143708800-143729200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:143709200-143729000	Weak transcription	Fetal Lung	lung
6	chr3:143712000-143728600	Weak transcription	Left Ventricle	heart
7	chr3:143717600-143729400	Weak transcription	NH-A	brain
8	chr3:143722600-143729400	Weak transcription	HSMM	muscle
9	chr3:143726000-143729400	Enhancers	Brain Hippocampus Middle	brain
10	chr3:143726400-143728400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:143726800-143728400	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:143727400-143728400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:143727400-143730800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:143727800-143728400	Enhancers	Brain Anterior Caudate	brain
15	chr3:143728000-143728400	Enhancers	NHLF	lung
16	chr3:143728000-143729400	Weak transcription	Brain Angular Gyrus	brain
17	chr3:143728000-143731600	Enhancers	Muscle Satellite Cultured Cells	--

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