Variant report

Variant	rs60856776
Chromosome Location	chr3:143931132-143931133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143902901..143904761-chr3:143930558..143932653,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1503327	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16854803	1.00[EUR][1000 genomes]
rs16854854	1.00[EUR][1000 genomes]
rs16854880	1.00[EUR][1000 genomes]
rs16854888	1.00[EUR][1000 genomes]
rs16855017	1.00[EUR][1000 genomes]
rs16855023	1.00[EUR][1000 genomes]
rs16855033	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16855089	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16855100	0.81[AMR][1000 genomes]
rs16855113	1.00[EUR][1000 genomes]
rs2361212	1.00[EUR][1000 genomes]
rs4340702	1.00[EUR][1000 genomes]
rs56213736	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61051212	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185584	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6788745	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6792671	1.00[EUR][1000 genomes]
rs73871132	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871139	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871145	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871160	1.00[EUR][1000 genomes]
rs73871161	1.00[EUR][1000 genomes]
rs73871162	1.00[EUR][1000 genomes]
rs73871163	1.00[EUR][1000 genomes]
rs7610600	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7633269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7634738	1.00[EUR][1000 genomes]
rs7635157	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591925	chr3:143821997-144019763	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1007963	chr3:143836773-144000203	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536750	chr3:143836773-144000203	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143930400-143931800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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