Variant report

Variant	rs16855113
Chromosome Location	chr3:143960415-143960416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1503327	1.00[EUR][1000 genomes]
rs16854854	1.00[EUR][1000 genomes]
rs16854880	1.00[EUR][1000 genomes]
rs16854888	1.00[EUR][1000 genomes]
rs16855017	1.00[EUR][1000 genomes]
rs16855023	1.00[EUR][1000 genomes]
rs16855033	1.00[EUR][1000 genomes]
rs16855089	1.00[EUR][1000 genomes]
rs56213736	1.00[EUR][1000 genomes]
rs60856776	1.00[EUR][1000 genomes]
rs61051212	1.00[EUR][1000 genomes]
rs61185584	1.00[EUR][1000 genomes]
rs6788745	1.00[EUR][1000 genomes]
rs6792671	1.00[EUR][1000 genomes]
rs73871132	1.00[EUR][1000 genomes]
rs73871139	1.00[EUR][1000 genomes]
rs73871145	1.00[EUR][1000 genomes]
rs73871160	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871161	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871163	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7610600	1.00[EUR][1000 genomes]
rs7633269	1.00[EUR][1000 genomes]
rs7634738	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635157	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv591925	chr3:143821997-144019763	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1007963	chr3:143836773-144000203	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv536750	chr3:143836773-144000203	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143959600-143960600	Enhancers	Colon Smooth Muscle	Colon
2	chr3:143959600-143962000	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:143959800-143962000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:143960200-143960600	Enhancers	HSMMtube	muscle
5	chr3:143960200-143960800	Enhancers	Brain Hippocampus Middle	brain
6	chr3:143960200-143961800	Enhancers	Brain Substantia Nigra	brain
7	chr3:143960200-143962000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:143960400-143960600	Enhancers	Ovary	ovary
9	chr3:143960400-143960800	Enhancers	Cortex derived primary cultured neurospheres	brain

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