Variant report
| Variant | rs16857332 |
|---|---|
| Chromosome Location | chr3:110601908-110601909 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11918904 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11921764 | 1.00[AMR][1000 genomes] |
| rs11925002 | 1.00[AMR][1000 genomes] |
| rs12489409 | 1.00[AMR][1000 genomes] |
| rs16857252 | 1.00[AMR][1000 genomes] |
| rs16857328 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16857415 | 1.00[AMR][1000 genomes] |
| rs16857423 | 1.00[AMR][1000 genomes] |
| rs34475462 | 1.00[AMR][1000 genomes] |
| rs4682228 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs4682232 | 1.00[AMR][1000 genomes] |
| rs59810782 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59995070 | 1.00[AMR][1000 genomes] |
| rs61178437 | 1.00[AMR][1000 genomes] |
| rs6414247 | 1.00[AMR][1000 genomes] |
| rs717160 | 1.00[AMR][1000 genomes] |
| rs723024 | 1.00[AMR][1000 genomes] |
| rs72934003 | 1.00[AMR][1000 genomes] |
| rs72934016 | 1.00[AMR][1000 genomes] |
| rs72934021 | 1.00[AMR][1000 genomes] |
| rs72934082 | 1.00[AMR][1000 genomes] |
| rs72948764 | 1.00[AMR][1000 genomes] |
| rs72948778 | 1.00[AMR][1000 genomes] |
| rs72950734 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72950741 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9824422 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1003106 | chr3:110264476-111105943 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014199 | chr3:110293896-110754155 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:110594200-110607600 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 2 | chr3:110600600-110605400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
