Variant report

Variant	rs59995070
Chromosome Location	chr3:110607680-110607681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11918904	1.00[AMR][1000 genomes]
rs11921764	1.00[AMR][1000 genomes]
rs11925002	1.00[AMR][1000 genomes]
rs12489409	1.00[AMR][1000 genomes]
rs16857252	1.00[AMR][1000 genomes]
rs16857328	1.00[AMR][1000 genomes]
rs16857332	1.00[AMR][1000 genomes]
rs16857415	1.00[AMR][1000 genomes]
rs16857423	1.00[AMR][1000 genomes]
rs34475462	1.00[AMR][1000 genomes]
rs4682228	1.00[AMR][1000 genomes]
rs4682232	1.00[AMR][1000 genomes]
rs59810782	1.00[AMR][1000 genomes]
rs61178437	1.00[AMR][1000 genomes]
rs6414247	1.00[AMR][1000 genomes]
rs717160	1.00[AMR][1000 genomes]
rs723024	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934003	1.00[AMR][1000 genomes]
rs72934016	1.00[AMR][1000 genomes]
rs72934021	1.00[AMR][1000 genomes]
rs72934082	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72948764	1.00[AMR][1000 genomes]
rs72948778	1.00[AMR][1000 genomes]
rs72950734	1.00[AMR][1000 genomes]
rs72950741	1.00[AMR][1000 genomes]
rs9824422	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110607400-110608200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr3:110607600-110607800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:110607600-110607800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
4	chr3:110607600-110608000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
5	chr3:110607600-110608000	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr3:110607600-110608000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:110607600-110608000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:110607600-110608200	Active TSS	H9 Cell Line	embryonic stem cell
9	chr3:110607600-110608200	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr3:110607600-110608200	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr3:110607600-110608200	Active TSS	Esophagus	oesophagus
12	chr3:110607600-110608200	Active TSS	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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