Variant report

Variant	rs16857423
Chromosome Location	chr3:110651428-110651429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11918904	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921621	0.84[AFR][1000 genomes]
rs11921764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11925002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12489409	1.00[AMR][1000 genomes]
rs1531508	1.00[MEX][hapmap]
rs16857252	1.00[AMR][1000 genomes]
rs16857328	1.00[AMR][1000 genomes]
rs16857332	1.00[AMR][1000 genomes]
rs16857415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34475462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682228	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs4682232	1.00[AMR][1000 genomes]
rs59810782	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59995070	1.00[AMR][1000 genomes]
rs61178437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6414247	1.00[AMR][1000 genomes]
rs717160	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs723024	1.00[AMR][1000 genomes]
rs72934003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934013	1.00[AFR][1000 genomes]
rs72934016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72934082	1.00[AMR][1000 genomes]
rs72948764	1.00[AMR][1000 genomes]
rs72948778	1.00[AMR][1000 genomes]
rs72950734	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72950741	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9824422	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762345	chr3:110614389-110668843	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110620200-110653800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:110650800-110653000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:110650800-110653200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:110650800-110666600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:110651200-110653200	Enhancers	NHLF	lung
6	chr3:110651400-110652000	Enhancers	Muscle Satellite Cultured Cells	--

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