Variant report
Variant | rs16858574 |
---|---|
Chromosome Location | chr3:146309472-146309473 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10513291 | 1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes] |
rs10513292 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes] |
rs10513293 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs10513294 | 1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs10513295 | 0.90[CHB][hapmap];0.84[ASN][1000 genomes] |
rs10513296 | 1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs12107033 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs12107454 | 0.84[ASN][1000 genomes] |
rs12107668 | 0.84[ASN][1000 genomes] |
rs12107910 | 1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
rs12108037 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs1507360 | 1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes] |
rs16858584 | 0.90[ASN][1000 genomes] |
rs16858634 | 1.00[AMR][1000 genomes] |
rs17354168 | 0.84[ASN][1000 genomes] |
rs17354174 | 0.84[ASN][1000 genomes] |
rs17354202 | 0.84[ASN][1000 genomes] |
rs17367049 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs17367469 | 0.90[ASN][1000 genomes] |
rs17367802 | 0.84[ASN][1000 genomes] |
rs17432180 | 0.84[ASN][1000 genomes] |
rs17432313 | 0.90[ASN][1000 genomes] |
rs17432334 | 0.84[ASN][1000 genomes] |
rs17432459 | 0.90[ASN][1000 genomes] |
rs17433008 | 0.84[ASN][1000 genomes] |
rs17433127 | 0.82[ASN][1000 genomes] |
rs17433365 | 0.84[ASN][1000 genomes] |
rs17433421 | 0.90[ASN][1000 genomes] |
rs2008809 | 0.84[ASN][1000 genomes] |
rs55706321 | 0.93[ASN][1000 genomes] |
rs55775630 | 0.92[ASN][1000 genomes] |
rs56303358 | 0.84[ASN][1000 genomes] |
rs56763997 | 0.84[ASN][1000 genomes] |
rs57144796 | 0.84[ASN][1000 genomes] |
rs57564033 | 0.90[ASN][1000 genomes] |
rs58620235 | 0.84[ASN][1000 genomes] |
rs60827860 | 0.88[ASN][1000 genomes] |
rs60897919 | 0.90[ASN][1000 genomes] |
rs61013048 | 0.84[ASN][1000 genomes] |
rs61254159 | 0.90[ASN][1000 genomes] |
rs66460167 | 0.80[ASN][1000 genomes] |
rs67360105 | 0.84[ASN][1000 genomes] |
rs67479911 | 0.84[ASN][1000 genomes] |
rs67678931 | 0.83[ASN][1000 genomes] |
rs6784661 | 0.84[ASN][1000 genomes] |
rs6787741 | 0.84[ASN][1000 genomes] |
rs6787813 | 0.84[ASN][1000 genomes] |
rs6795178 | 0.84[ASN][1000 genomes] |
rs6797790 | 0.84[ASN][1000 genomes] |
rs68009171 | 0.84[ASN][1000 genomes] |
rs72988643 | 0.84[ASN][1000 genomes] |
rs72988650 | 0.90[ASN][1000 genomes] |
rs72988655 | 0.90[ASN][1000 genomes] |
rs72988657 | 0.90[ASN][1000 genomes] |
rs72988660 | 0.90[ASN][1000 genomes] |
rs72988664 | 0.90[ASN][1000 genomes] |
rs72988673 | 1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs72988675 | 0.90[ASN][1000 genomes] |
rs73003915 | 0.85[ASN][1000 genomes] |
rs73003940 | 0.90[ASN][1000 genomes] |
rs73003942 | 0.87[ASN][1000 genomes] |
rs73003949 | 0.90[ASN][1000 genomes] |
rs73003950 | 0.90[ASN][1000 genomes] |
rs73003961 | 0.90[ASN][1000 genomes] |
rs73156949 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv432489 | chr3:146271370-146323969 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
2 | nsv877623 | chr3:146278616-146319368 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:146298600-146313200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr3:146302600-146316400 | Weak transcription | Placenta Amnion | Placenta Amnion |