Variant report

Variant	rs55775630
Chromosome Location	chr3:146322579-146322580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10513291	0.82[ASN][1000 genomes]
rs10513292	0.82[ASN][1000 genomes]
rs10513293	0.89[ASN][1000 genomes]
rs10513294	0.89[ASN][1000 genomes]
rs10513295	0.89[ASN][1000 genomes]
rs10513296	0.89[ASN][1000 genomes]
rs12107033	0.89[ASN][1000 genomes]
rs12107454	0.89[ASN][1000 genomes]
rs12107668	0.89[ASN][1000 genomes]
rs12107910	0.87[ASN][1000 genomes]
rs12108037	0.89[ASN][1000 genomes]
rs12487393	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12488014	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12488044	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12488086	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12490508	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12491246	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12491247	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12494495	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12494531	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1507360	0.88[ASN][1000 genomes]
rs16858574	0.92[ASN][1000 genomes]
rs16858584	0.82[ASN][1000 genomes]
rs17354168	0.89[ASN][1000 genomes]
rs17354174	0.89[ASN][1000 genomes]
rs17354202	0.89[ASN][1000 genomes]
rs17367049	0.89[ASN][1000 genomes]
rs17367469	0.82[ASN][1000 genomes]
rs17367802	0.89[ASN][1000 genomes]
rs17368355	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17368390	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17368418	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17432180	0.89[ASN][1000 genomes]
rs17432313	0.82[ASN][1000 genomes]
rs17432334	0.89[ASN][1000 genomes]
rs17432459	0.82[ASN][1000 genomes]
rs17433008	0.89[ASN][1000 genomes]
rs17433127	0.87[ASN][1000 genomes]
rs17433365	0.89[ASN][1000 genomes]
rs17433421	0.82[ASN][1000 genomes]
rs17433833	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2008809	0.89[ASN][1000 genomes]
rs28488194	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28489479	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28594377	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55689464	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55706321	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56003702	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56191132	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56303358	0.89[ASN][1000 genomes]
rs56314453	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56763997	0.89[ASN][1000 genomes]
rs57144796	0.89[ASN][1000 genomes]
rs57564033	0.82[ASN][1000 genomes]
rs58620235	0.89[ASN][1000 genomes]
rs60827860	0.81[ASN][1000 genomes]
rs60897919	0.82[ASN][1000 genomes]
rs61013048	0.89[ASN][1000 genomes]
rs61254159	0.82[ASN][1000 genomes]
rs66460167	0.85[ASN][1000 genomes]
rs66700259	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs66899343	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs67012106	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs67360105	0.89[ASN][1000 genomes]
rs67365594	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs67479911	0.89[ASN][1000 genomes]
rs67678931	0.88[ASN][1000 genomes]
rs67744105	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6784661	0.89[ASN][1000 genomes]
rs6787741	0.89[ASN][1000 genomes]
rs6787813	0.89[ASN][1000 genomes]
rs6795178	0.89[ASN][1000 genomes]
rs6797790	0.89[ASN][1000 genomes]
rs68009171	0.89[ASN][1000 genomes]
rs72988643	0.89[ASN][1000 genomes]
rs72988650	0.82[ASN][1000 genomes]
rs72988655	0.82[ASN][1000 genomes]
rs72988657	0.82[ASN][1000 genomes]
rs72988660	0.82[ASN][1000 genomes]
rs72988664	0.82[ASN][1000 genomes]
rs72988675	0.82[ASN][1000 genomes]
rs73003940	0.82[ASN][1000 genomes]
rs73003949	0.82[ASN][1000 genomes]
rs73003950	0.82[ASN][1000 genomes]
rs73003961	0.82[ASN][1000 genomes]
rs73156949	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73156968	0.95[AFR][1000 genomes]
rs7612952	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7624588	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7624876	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7634720	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7634919	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146320800-146325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146321800-146322600	Enhancers	Colon Smooth Muscle	Colon
3	chr3:146322000-146322600	Active TSS	Placenta Amnion	Placenta Amnion

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