Variant report

Variant	rs61254159
Chromosome Location	chr3:146307721-146307722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146307488..146308559-chr3:146358352..146359232,4	MCF-7	breast:
2	chr3:146307443..146308365-chr3:146356345..146357148,6	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10513291	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10513293	0.94[ASN][1000 genomes]
rs10513294	0.94[ASN][1000 genomes]
rs10513295	0.94[ASN][1000 genomes]
rs10513296	0.94[ASN][1000 genomes]
rs12107033	0.94[ASN][1000 genomes]
rs12107454	0.94[ASN][1000 genomes]
rs12107668	0.94[ASN][1000 genomes]
rs12107910	0.92[ASN][1000 genomes]
rs12108037	0.94[ASN][1000 genomes]
rs1507360	0.93[ASN][1000 genomes]
rs16858574	0.90[ASN][1000 genomes]
rs16858584	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17354168	0.94[ASN][1000 genomes]
rs17354174	0.94[ASN][1000 genomes]
rs17354202	0.94[ASN][1000 genomes]
rs17367049	0.94[ASN][1000 genomes]
rs17367469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17367802	0.94[ASN][1000 genomes]
rs17432180	0.94[ASN][1000 genomes]
rs17432313	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17432334	0.94[ASN][1000 genomes]
rs17432459	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17433008	0.94[ASN][1000 genomes]
rs17433127	0.92[ASN][1000 genomes]
rs17433365	0.94[ASN][1000 genomes]
rs17433421	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008809	0.94[ASN][1000 genomes]
rs55706321	0.84[ASN][1000 genomes]
rs55775630	0.82[ASN][1000 genomes]
rs56303358	0.94[ASN][1000 genomes]
rs56763997	0.94[ASN][1000 genomes]
rs57144796	0.94[ASN][1000 genomes]
rs57564033	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58620235	0.94[ASN][1000 genomes]
rs60827860	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60897919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61013048	0.94[ASN][1000 genomes]
rs66460167	0.90[ASN][1000 genomes]
rs67360105	0.94[ASN][1000 genomes]
rs67479911	0.94[ASN][1000 genomes]
rs67678931	0.93[ASN][1000 genomes]
rs6784661	0.94[ASN][1000 genomes]
rs6787741	0.94[ASN][1000 genomes]
rs6787813	0.94[ASN][1000 genomes]
rs6795178	0.94[ASN][1000 genomes]
rs6797790	0.94[ASN][1000 genomes]
rs68009171	0.94[ASN][1000 genomes]
rs72988643	0.94[ASN][1000 genomes]
rs72988650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988655	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988657	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988660	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72988675	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003915	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73003940	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003942	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73003949	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003950	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73003961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156949	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv877623	chr3:146278616-146319368	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146298600-146313200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146301400-146308200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:146302600-146316400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:146304200-146308000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:146305000-146308200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:146307600-146308000	Weak transcription	HepG2	liver
7	chr3:146307600-146308600	Enhancers	HUES48 Cell Line	embryonic stem cell

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