The 2.0 version of rSNPBase

Variant report

Variant rs16859890
Chromosome Location chr3:112354837-112354838
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:112336600-112355800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr3:112342600-112359600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr3:112343400-112358000 Weak transcription Pancreas Pancrea
4 chr3:112345200-112359400 Weak transcription Esophagus oesophagus
5 chr3:112348200-112358400 Transcr. at gene 5' and 3' Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr3:112348600-112357200 Transcr. at gene 5' and 3' Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr3:112348800-112358400 Weak transcription Hela-S3 cervix
8 chr3:112351200-112355600 Enhancers Fetal Kidney kidney
9 chr3:112351400-112355000 Flanking Active TSS Adipose Nuclei Adipose
10 chr3:112351400-112358600 Transcr. at gene 5' and 3' Osteobl bone
11 chr3:112351800-112355200 Weak transcription Right Atrium heart
12 chr3:112351800-112357800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr3:112352000-112356000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr3:112352600-112355000 Enhancers HUES48 Cell Line embryonic stem cell
15 chr3:112352600-112358400 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr3:112352800-112355800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr3:112353000-112355800 Weak transcription Brain Anterior Caudate brain
18 chr3:112353000-112358600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr3:112353000-112358600 Weak transcription Fetal Brain Male brain
20 chr3:112353200-112355800 Active TSS Duodenum Smooth Muscle Duodenum
21 chr3:112353400-112355000 Enhancers HUES64 Cell Line embryonic stem cell
22 chr3:112353400-112356200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr3:112353800-112355200 Enhancers Ovary ovary
24 chr3:112353800-112356400 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
25 chr3:112353800-112357200 Flanking Active TSS Cortex derived primary cultured neurospheres brain
26 chr3:112354000-112355000 Enhancers Fetal Heart heart
27 chr3:112354000-112355200 Enhancers HUVEC blood vessel
28 chr3:112354000-112355600 Weak transcription Left Ventricle heart
29 chr3:112354000-112355800 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
30 chr3:112354000-112355800 Enhancers Skeletal Muscle Male skeletal muscle
31 chr3:112354000-112356200 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
32 chr3:112354000-112356600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
33 chr3:112354000-112357000 Active TSS Brain Hippocampus Middle brain
34 chr3:112354000-112359000 Flanking Active TSS NH-A brain
35 chr3:112354000-112359200 Weak transcription Fetal Brain Female brain
36 chr3:112354000-112360600 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr3:112354200-112356000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr3:112354200-112357800 Weak transcription H9 Cell Line embryonic stem cell
39 chr3:112354200-112358000 Active TSS Skeletal Muscle Female skeletal muscle
40 chr3:112354200-112358200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
41 chr3:112354400-112355200 Flanking Active TSS A549 lung
42 chr3:112354400-112355200 Active TSS NHDF-Ad bronchial
43 chr3:112354400-112355400 Flanking Active TSS Muscle Satellite Cultured Cells --
44 chr3:112354400-112355600 Weak transcription Aorta Aorta
45 chr3:112354400-112355600 Active TSS HSMM muscle
46 chr3:112354400-112356200 Weak transcription Fetal Intestine Large intestine
47 chr3:112354400-112356800 Active TSS NHLF lung
48 chr3:112354400-112357800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr3:112354400-112357800 Active TSS HSMMtube muscle
50 chr3:112354400-112359000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015