Variant report

Variant	rs16859911
Chromosome Location	chr3:112370669-112370670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr3:112370475-112370756	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr3:112370454-112370745	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr3:112370508-112370676	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:112363786..112368966-chr3:112369502..112375118,11	MCF-7	breast:
2	chr3:112359787..112361469-chr3:112368713..112371547,2	K562	blood:
3	chr3:112362097..112368318-chr3:112369170..112375638,8	MCF-7	breast:

Variant related genes	Relation type
CCDC80	TF binding region
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12629592	1.00[CEU][hapmap]
rs12630906	0.80[ASN][1000 genomes]
rs12634199	0.81[ASN][1000 genomes]
rs12634229	0.83[ASN][1000 genomes]
rs12637057	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs12637953	0.88[CHB][hapmap];0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs12639600	0.81[ASN][1000 genomes]
rs16845073	0.82[ASN][1000 genomes]
rs16859850	1.00[CEU][hapmap]
rs16859890	0.85[AMR][1000 genomes]
rs16859897	0.94[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16859916	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859930	0.82[ASN][1000 genomes]
rs16859961	0.80[ASN][1000 genomes]
rs2638023	1.00[CEU][hapmap]
rs28364588	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28364589	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28364604	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3856725	1.00[CEU][hapmap]
rs4682417	1.00[CEU][hapmap]
rs56721759	0.97[ASN][1000 genomes]
rs7640793	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112363400-112373600	Weak transcription	Esophagus	oesophagus
2	chr3:112364600-112372800	Enhancers	Osteobl	bone
3	chr3:112366400-112372000	Weak transcription	Fetal Lung	lung
4	chr3:112366400-112372400	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:112366400-112372600	Enhancers	NHDF-Ad	bronchial
6	chr3:112366400-112373800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:112367000-112371800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:112367000-112371800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:112367000-112373800	Enhancers	HSMM	muscle
10	chr3:112367600-112370800	Enhancers	NH-A	brain
11	chr3:112367600-112372200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:112367800-112372800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:112368000-112372200	Enhancers	NHEK	skin
14	chr3:112368000-112372800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:112368000-112375000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:112368200-112370800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:112368200-112372600	Enhancers	HSMMtube	muscle
18	chr3:112368200-112372800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:112368200-112375200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:112368400-112371800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:112368400-112371800	Weak transcription	Placenta	Placenta
22	chr3:112368600-112372000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:112368600-112373600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:112369200-112371000	Enhancers	HMEC	breast
25	chr3:112369400-112370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:112369400-112371400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:112369800-112371800	Weak transcription	Adipose Nuclei	Adipose
28	chr3:112370000-112370800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:112370200-112370800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:112370200-112371800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:112370400-112370800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:112370400-112370800	Enhancers	A549	lung
33	chr3:112370600-112371600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:112370600-112371800	Weak transcription	NHLF	lung

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