Variant report

Variant	rs16860198
Chromosome Location	chr4:47415812-47415813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10016916	0.95[CEU][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10017560	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10028945	0.87[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10470771	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11934717	0.81[EUR][1000 genomes]
rs11940241	0.81[EUR][1000 genomes]
rs12510975	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13106855	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13434696	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4130363	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4403019	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62297855	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62297856	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62300077	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62300078	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73234578	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73234587	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7436716	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7659411	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7672333	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7678771	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7679148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16860198	CORIN	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain
2	chr4:47415000-47416000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:47415000-47416000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:47415400-47416800	Enhancers	Fetal Kidney	kidney
5	chr4:47415600-47416400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:47415800-47416400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:47415800-47416800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:47415800-47417000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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