Variant report

Variant	rs4403019
Chromosome Location	chr4:47435315-47435316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GABRB1-1	chr4:47433977-47440976	ENSG00000260918.1

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10004682	0.81[EUR][1000 genomes]
rs10016916	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10017560	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028945	0.86[ASW][hapmap];0.87[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.83[LWK][hapmap];0.93[TSI][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10470771	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938484	0.80[EUR][1000 genomes]
rs11934717	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11940241	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12510975	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13106855	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs13434696	0.91[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16860198	0.91[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28625886	0.81[EUR][1000 genomes]
rs28631883	0.81[EUR][1000 genomes]
rs4130363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4356892	0.81[CHB][hapmap]
rs4388055	0.81[EUR][1000 genomes]
rs4446282	0.81[EUR][1000 genomes]
rs4450898	0.81[EUR][1000 genomes]
rs4635794	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs4695232	0.81[CHB][hapmap]
rs62297852	0.91[ASN][1000 genomes]
rs62297855	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62297856	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62297858	0.94[ASN][1000 genomes]
rs62300077	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62300078	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822230	0.88[CEU][hapmap]
rs73234555	0.94[ASN][1000 genomes]
rs73234578	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234586	0.88[ASN][1000 genomes]
rs73234587	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7436716	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659411	1.00[JPT][hapmap]
rs7672333	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678771	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7679148	0.91[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7693987	0.88[CEU][hapmap];0.81[CHB][hapmap];0.80[TSI][hapmap]
rs9942270	0.80[EUR][1000 genomes]
rs9998407	0.84[CEU][hapmap];0.81[CHB][hapmap];0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47404000-47439000	Weak transcription	Brain Anterior Caudate	brain
2	chr4:47433000-47437000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:47433800-47435800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:47433800-47436200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:47435200-47436200	Enhancers	Primary hematopoietic stem cells	blood

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