Variant report

Variant	rs16860369
Chromosome Location	chr3:112770832-112770833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112769888..112771084-chr3:113006659..113007573,4	MCF-7	breast:
2	chr3:112770714..112773506-chr3:112929174..112932492,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144857	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2895407	1.00[ASW][hapmap];0.95[LWK][hapmap];0.92[MKK][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6778129	0.84[AFR][1000 genomes]
rs6781014	0.91[YRI][hapmap];0.93[AFR][1000 genomes]
rs6792425	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73853709	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73853710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112770000-112771000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:112770000-112771000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:112770000-112771000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:112770000-112771000	Enhancers	Right Atrium	heart
6	chr3:112770000-112771200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:112770200-112771000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:112770200-112771000	Enhancers	Fetal Muscle Trunk	muscle
9	chr3:112770200-112771000	Enhancers	NHEK	skin
10	chr3:112770200-112771000	Enhancers	NHLF	lung
11	chr3:112770200-112771200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:112770200-112771200	Enhancers	Fetal Intestine Large	intestine
13	chr3:112770200-112771200	Enhancers	HMEC	breast
14	chr3:112770200-112771400	Enhancers	Fetal Muscle Leg	muscle
15	chr3:112770200-112771400	Enhancers	Fetal Stomach	stomach
16	chr3:112770200-112771600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:112770200-112771800	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:112770200-112772200	Enhancers	Primary T cells from cord blood	blood
19	chr3:112770200-112776800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr3:112770200-112784400	Weak transcription	Primary B cells from cord blood	blood
21	chr3:112770400-112771000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
22	chr3:112770400-112771000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:112770400-112771000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:112770400-112771000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:112770400-112771000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:112770400-112771000	Enhancers	GM12878-XiMat	blood
27	chr3:112770400-112771000	Enhancers	K562	blood
28	chr3:112770400-112771400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:112770400-112772000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:112770600-112771000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
31	chr3:112770600-112771000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:112770600-112771000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr3:112770600-112771000	Enhancers	Fetal Kidney	kidney
34	chr3:112770600-112771000	Enhancers	Psoas Muscle	Psoas
35	chr3:112770600-112771000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr3:112770600-112771000	Enhancers	Osteobl	bone
37	chr3:112770600-112771200	Enhancers	Adipose Nuclei	Adipose
38	chr3:112770600-112771400	Enhancers	Fetal Lung	lung
39	chr3:112770600-112771400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr3:112770600-112771600	Enhancers	Colon Smooth Muscle	Colon
41	chr3:112770600-112771600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr3:112770600-112771600	Enhancers	Stomach Smooth Muscle	stomach
43	chr3:112770600-112772400	Weak transcription	A549	lung
44	chr3:112770600-112773200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:112770600-112773200	Weak transcription	Liver	Liver
46	chr3:112770600-112773200	Weak transcription	HSMM	muscle
47	chr3:112770600-112773400	Weak transcription	Fetal Heart	heart
48	chr3:112770600-112774800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr3:112770600-112775600	Weak transcription	Brain Germinal Matrix	brain
50	chr3:112770600-112775800	Weak transcription	Brain Cingulate Gyrus	brain

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