Variant report

Variant	rs73853709
Chromosome Location	chr3:112770593-112770594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:112769779..112770713-chr3:112994422..112995284,3	MCF-7	breast:
2	chr3:112770171..112770690-chr3:112855035..112855555,2	MCF-7	breast:
3	chr3:112769888..112771084-chr3:113006659..113007573,4	MCF-7	breast:
4	chr3:112770020..112770678-chr3:112994428..112995328,4	MCF-7	breast:
5	chr3:112769775..112770734-chr3:112996923..112997769,3	MCF-7	breast:
6	chr3:112769856..112770762-chr3:113006684..113008064,6	MCF-7	breast:
7	chr3:112769762..112770724-chr3:112996830..112997711,9	MCF-7	breast:
8	chr3:112769792..112770688-chr3:113006269..113007601,8	K562	blood:

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16860369	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2895407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6781014	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6792425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853710	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112769800-112770600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:112770000-112770600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:112770000-112770600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr3:112770000-112770600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:112770000-112770600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:112770000-112770600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr3:112770000-112770600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr3:112770000-112770600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:112770000-112770600	Active TSS	Aorta	Aorta
11	chr3:112770000-112770600	Enhancers	Liver	Liver
12	chr3:112770000-112770600	Active TSS	Brain Angular Gyrus	brain
13	chr3:112770000-112770600	Enhancers	Brain Germinal Matrix	brain
14	chr3:112770000-112770600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:112770000-112770600	Active TSS	Duodenum Smooth Muscle	Duodenum
16	chr3:112770000-112770600	Enhancers	Fetal Heart	heart
17	chr3:112770000-112770600	Enhancers	Stomach Mucosa	stomach
18	chr3:112770000-112770600	Flanking Active TSS	A549	lung
19	chr3:112770000-112770600	Enhancers	Dnd41	blood
20	chr3:112770000-112770800	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:112770000-112770800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr3:112770000-112770800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:112770000-112771000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:112770000-112771000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:112770000-112771000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:112770000-112771000	Enhancers	Right Atrium	heart
27	chr3:112770000-112771200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:112770200-112770600	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr3:112770200-112770600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:112770200-112770600	Enhancers	Primary B cells from peripheral blood	blood
31	chr3:112770200-112770600	Enhancers	Primary T cells fromperipheralblood	blood
32	chr3:112770200-112770600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr3:112770200-112770600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:112770200-112770600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:112770200-112770600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:112770200-112770600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:112770200-112770600	Enhancers	Brain Substantia Nigra	brain
38	chr3:112770200-112770600	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr3:112770200-112770600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr3:112770200-112770600	Flanking Active TSS	Fetal Lung	lung
41	chr3:112770200-112770600	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr3:112770200-112770600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr3:112770200-112770600	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr3:112770200-112770600	Enhancers	HSMM	muscle
45	chr3:112770200-112770600	Enhancers	HUVEC	blood vessel
46	chr3:112770200-112770600	Flanking Active TSS	Osteobl	bone
47	chr3:112770200-112771000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr3:112770200-112771000	Enhancers	Fetal Muscle Trunk	muscle
49	chr3:112770200-112771000	Enhancers	NHEK	skin
50	chr3:112770200-112771000	Enhancers	NHLF	lung

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