Variant report

Variant	rs73853710
Chromosome Location	chr3:112770792-112770793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112769888..112771084-chr3:113006659..113007573,4	MCF-7	breast:
2	chr3:112770714..112773506-chr3:112929174..112932492,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144857	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16860369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2895407	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6778129	0.84[AFR][1000 genomes]
rs6781014	0.93[AFR][1000 genomes]
rs6792425	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73853709	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112770000-112770800	Enhancers	Primary hematopoietic stem cells	blood
3	chr3:112770000-112770800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:112770000-112770800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:112770000-112771000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:112770000-112771000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:112770000-112771000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:112770000-112771000	Enhancers	Right Atrium	heart
9	chr3:112770000-112771200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:112770200-112771000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:112770200-112771000	Enhancers	Fetal Muscle Trunk	muscle
12	chr3:112770200-112771000	Enhancers	NHEK	skin
13	chr3:112770200-112771000	Enhancers	NHLF	lung
14	chr3:112770200-112771200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:112770200-112771200	Enhancers	Fetal Intestine Large	intestine
16	chr3:112770200-112771200	Enhancers	HMEC	breast
17	chr3:112770200-112771400	Enhancers	Fetal Muscle Leg	muscle
18	chr3:112770200-112771400	Enhancers	Fetal Stomach	stomach
19	chr3:112770200-112771600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr3:112770200-112771800	Enhancers	Rectal Smooth Muscle	rectum
21	chr3:112770200-112772200	Enhancers	Primary T cells from cord blood	blood
22	chr3:112770200-112776800	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr3:112770200-112784400	Weak transcription	Primary B cells from cord blood	blood
24	chr3:112770400-112770800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr3:112770400-112770800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr3:112770400-112770800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
27	chr3:112770400-112770800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr3:112770400-112770800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:112770400-112770800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:112770400-112770800	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr3:112770400-112770800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:112770400-112770800	Flanking Active TSS	Fetal Brain Male	brain
33	chr3:112770400-112770800	Active TSS	Fetal Brain Female	brain
34	chr3:112770400-112770800	Flanking Active TSS	NHDF-Ad	bronchial
35	chr3:112770400-112771000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr3:112770400-112771000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:112770400-112771000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:112770400-112771000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr3:112770400-112771000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:112770400-112771000	Enhancers	GM12878-XiMat	blood
41	chr3:112770400-112771000	Enhancers	K562	blood
42	chr3:112770400-112771400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:112770400-112772000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr3:112770600-112770800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
45	chr3:112770600-112770800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr3:112770600-112770800	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr3:112770600-112770800	Enhancers	Brain Anterior Caudate	brain
48	chr3:112770600-112770800	Enhancers	NH-A	brain
49	chr3:112770600-112771000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
50	chr3:112770600-112771000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

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