Variant report

Variant	rs16861558
Chromosome Location	chr1:168763429-168763430
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16861540	1.00[AMR][1000 genomes]
rs16861543	1.00[AMR][1000 genomes]
rs16861544	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16861545	1.00[AMR][1000 genomes]
rs16861563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2206297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2206298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57305392	1.00[AMR][1000 genomes]
rs73028610	1.00[AMR][1000 genomes]
rs73036041	1.00[AMR][1000 genomes]
rs73036057	1.00[AMR][1000 genomes]
rs73038220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038237	0.92[AFR][1000 genomes]
rs73043974	1.00[AMR][1000 genomes]
rs7515871	1.00[AMR][1000 genomes]
rs7516889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168755600-168772800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:168757800-168764200	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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