Variant report

Variant	rs2206297
Chromosome Location	chr1:168770680-168770681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16861540	1.00[AMR][1000 genomes]
rs16861543	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16861544	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16861545	1.00[AMR][1000 genomes]
rs16861558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16861563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2206298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57305392	1.00[AMR][1000 genomes]
rs73028610	1.00[AMR][1000 genomes]
rs73036041	1.00[AMR][1000 genomes]
rs73036057	1.00[AMR][1000 genomes]
rs73038220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038237	0.92[AFR][1000 genomes]
rs73043974	1.00[AMR][1000 genomes]
rs7515871	1.00[AMR][1000 genomes]
rs7516889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168755600-168772800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:168768800-168770800	Enhancers	Fetal Intestine Small	intestine
3	chr1:168769000-168771600	Enhancers	Duodenum Mucosa	Duodenum
4	chr1:168769000-168772000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:168769000-168773800	Enhancers	Fetal Intestine Large	intestine
6	chr1:168769200-168772600	Enhancers	HepG2	liver
7	chr1:168769200-168774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:168769400-168773000	Enhancers	Hela-S3	cervix
9	chr1:168770000-168771400	Weak transcription	Fetal Kidney	kidney
10	chr1:168770000-168772400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:168770000-168773400	Weak transcription	A549	lung
12	chr1:168770200-168771000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:168770200-168771200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:168770200-168771800	Enhancers	Liver	Liver
15	chr1:168770400-168771000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr1:168770400-168771400	Weak transcription	Small Intestine	intestine
17	chr1:168770400-168772200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr1:168770400-168772400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:168770400-168772600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:168770400-168773200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:168770400-168773200	Weak transcription	Gastric	stomach
22	chr1:168770600-168771000	Weak transcription	Stomach Mucosa	stomach
23	chr1:168770600-168771400	Weak transcription	Pancreas	Pancrea
24	chr1:168770600-168771800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:168770600-168772800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:168770600-168773400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links