Variant report

Variant	rs7516889
Chromosome Location	chr1:168745309-168745310
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16861540	1.00[AMR][1000 genomes]
rs16861543	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16861544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16861545	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16861558	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16861563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2206297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2206298	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57305392	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028610	1.00[AMR][1000 genomes]
rs73036041	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036057	1.00[AMR][1000 genomes]
rs73038220	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038237	0.87[AFR][1000 genomes]
rs73043974	1.00[AMR][1000 genomes]
rs7515871	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168738800-168745600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:168743800-168746200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:168744200-168745400	Weak transcription	Fetal Heart	heart
4	chr1:168745200-168745400	Enhancers	Fetal Muscle Leg	muscle
5	chr1:168745200-168745400	Enhancers	Rectal Smooth Muscle	rectum
6	chr1:168745200-168745600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:168745200-168745600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:168745200-168745600	Enhancers	Brain Cingulate Gyrus	brain
9	chr1:168745200-168745800	Enhancers	Brain Hippocampus Middle	brain
10	chr1:168745200-168746000	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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