Variant report

Variant	rs16862846
Chromosome Location	chr3:150490238-150490239
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16862828	1.00[YRI][hapmap]
rs3773613	1.00[ASN][1000 genomes]
rs73010978	0.95[ASN][1000 genomes]
rs7622742	1.00[YRI][hapmap]
rs7631987	0.95[ASN][1000 genomes]
rs935223	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150482000-150491600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:150482000-150491800	Weak transcription	Gastric	stomach
3	chr3:150482800-150492600	Weak transcription	Spleen	Spleen
4	chr3:150483800-150490800	Weak transcription	Stomach Mucosa	stomach
5	chr3:150484200-150498600	Weak transcription	Fetal Intestine Small	intestine
6	chr3:150484800-150493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:150489200-150492800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:150489200-150493000	Weak transcription	NHDF-Ad	bronchial
9	chr3:150489200-150493200	Weak transcription	Osteobl	bone
10	chr3:150489400-150492600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:150489600-150492600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:150489800-150491600	Weak transcription	Left Ventricle	heart
13	chr3:150489800-150491800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:150489800-150492600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:150489800-150492600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:150489800-150492600	Weak transcription	Pancreas	Pancrea
17	chr3:150490000-150491200	Weak transcription	Liver	Liver
18	chr3:150490000-150491400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr3:150490200-150491400	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links