Variant report

Variant	rs935223
Chromosome Location	chr3:150487531-150487532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150486959..150487925-chr3:150562003..150562943,2	MCF-7	breast:
2	chr3:150454862..150455640-chr3:150487007..150487615,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1345083	1.00[EUR][1000 genomes]
rs16862718	1.00[EUR][1000 genomes]
rs16862846	1.00[ASN][1000 genomes]
rs3773613	1.00[ASN][1000 genomes]
rs58823857	1.00[EUR][1000 genomes]
rs6772881	1.00[EUR][1000 genomes]
rs6774750	1.00[EUR][1000 genomes]
rs6794743	1.00[EUR][1000 genomes]
rs73001325	1.00[EUR][1000 genomes]
rs73001336	1.00[EUR][1000 genomes]
rs73001339	1.00[EUR][1000 genomes]
rs73001358	1.00[EUR][1000 genomes]
rs73003034	1.00[EUR][1000 genomes]
rs73003079	1.00[EUR][1000 genomes]
rs73010978	0.95[ASN][1000 genomes]
rs73869298	1.00[EUR][1000 genomes]
rs73869299	1.00[EUR][1000 genomes]
rs73869301	1.00[EUR][1000 genomes]
rs7619908	1.00[EUR][1000 genomes]
rs7631987	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1820145	chr3:150478018-150487945	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150482000-150488200	Weak transcription	Left Ventricle	heart
2	chr3:150482000-150488200	Weak transcription	Ovary	ovary
3	chr3:150482000-150491600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:150482000-150491800	Weak transcription	Gastric	stomach
5	chr3:150482600-150488000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:150482600-150488400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:150482600-150488400	Weak transcription	NHDF-Ad	bronchial
8	chr3:150482600-150488400	Weak transcription	Osteobl	bone
9	chr3:150482800-150488000	Weak transcription	Fetal Heart	heart
10	chr3:150482800-150488200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:150482800-150488400	Weak transcription	Placenta	Placenta
12	chr3:150482800-150488800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:150482800-150488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:150482800-150488800	Weak transcription	Adipose Nuclei	Adipose
15	chr3:150482800-150492600	Weak transcription	Spleen	Spleen
16	chr3:150483000-150488000	Weak transcription	Liver	Liver
17	chr3:150483800-150490800	Weak transcription	Stomach Mucosa	stomach
18	chr3:150484200-150488400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:150484200-150498600	Weak transcription	Fetal Intestine Small	intestine
20	chr3:150484400-150488200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:150484800-150488200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:150484800-150493800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:150485800-150487800	Weak transcription	HepG2	liver
24	chr3:150485800-150488800	Weak transcription	Right Atrium	heart
25	chr3:150486800-150488000	Weak transcription	Fetal Muscle Leg	muscle

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