Variant report

Variant	rs73869298
Chromosome Location	chr3:150521579-150521580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1345083	1.00[EUR][1000 genomes]
rs58823857	1.00[EUR][1000 genomes]
rs6772881	1.00[EUR][1000 genomes]
rs6774750	1.00[EUR][1000 genomes]
rs6794743	1.00[EUR][1000 genomes]
rs73001358	1.00[EUR][1000 genomes]
rs73003034	1.00[EUR][1000 genomes]
rs73003079	1.00[EUR][1000 genomes]
rs73869299	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869301	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7619908	1.00[EUR][1000 genomes]
rs935223	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150516400-150521600	Weak transcription	Gastric	stomach
2	chr3:150516600-150523200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:150516800-150522600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150517000-150522600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:150517800-150522400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:150521400-150521600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr3:150521400-150521600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
8	chr3:150521400-150521800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:150521400-150521800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:150521400-150521800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr3:150521400-150521800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:150521400-150522000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:150521400-150522000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:150521400-150522600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr3:150521400-150525200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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