Variant report

Variant	rs73003079
Chromosome Location	chr3:150399222-150399223
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1345083	1.00[EUR][1000 genomes]
rs16862718	1.00[EUR][1000 genomes]
rs58823857	1.00[EUR][1000 genomes]
rs6772881	1.00[EUR][1000 genomes]
rs6774750	1.00[EUR][1000 genomes]
rs6794743	1.00[EUR][1000 genomes]
rs73001325	1.00[EUR][1000 genomes]
rs73001336	1.00[EUR][1000 genomes]
rs73001339	1.00[EUR][1000 genomes]
rs73001358	1.00[EUR][1000 genomes]
rs73003034	1.00[EUR][1000 genomes]
rs73869298	1.00[EUR][1000 genomes]
rs73869299	1.00[EUR][1000 genomes]
rs73869301	1.00[EUR][1000 genomes]
rs7619908	1.00[EUR][1000 genomes]
rs935223	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150397600-150401000	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:150398000-150400200	Enhancers	Primary B cells from cord blood	blood
3	chr3:150398200-150399400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:150398200-150399600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:150398200-150400400	Enhancers	Dnd41	blood
6	chr3:150398400-150399600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr3:150398400-150400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:150398600-150399400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:150398600-150399400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:150398600-150399400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:150398600-150399800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:150398800-150399400	Flanking Active TSS	GM12878-XiMat	blood
13	chr3:150398800-150399800	Weak transcription	Fetal Thymus	thymus
14	chr3:150399000-150399400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr3:150399000-150400200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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