Variant report

Variant	rs73001336
Chromosome Location	chr3:150278787-150278788
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150277090..150279945-chr3:150281448..150284053,2	K562	blood:
2	chr3:150274346..150276265-chr3:150277986..150280973,2	K562	blood:
3	chr3:150278736..150281977-chr3:150283221..150285875,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144895	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16862718	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58823857	1.00[EUR][1000 genomes]
rs62269101	0.80[AFR][1000 genomes]
rs6772881	1.00[EUR][1000 genomes]
rs6774750	1.00[EUR][1000 genomes]
rs6794743	1.00[EUR][1000 genomes]
rs73001325	1.00[EUR][1000 genomes]
rs73001339	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73001358	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73003034	1.00[EUR][1000 genomes]
rs73003079	1.00[EUR][1000 genomes]
rs935223	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265200-150299400	Weak transcription	Esophagus	oesophagus
2	chr3:150265200-150302800	Weak transcription	Gastric	stomach
3	chr3:150265400-150279600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:150265400-150305800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:150265600-150284600	Weak transcription	Right Ventricle	heart
6	chr3:150265600-150293400	Weak transcription	Aorta	Aorta
7	chr3:150265600-150294000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:150265600-150304200	Weak transcription	Fetal Brain Male	brain
9	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:150266000-150284400	Weak transcription	Brain Anterior Caudate	brain
12	chr3:150266000-150285000	Weak transcription	Colonic Mucosa	Colon
13	chr3:150266000-150304600	Weak transcription	Fetal Heart	heart
14	chr3:150266000-150307600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:150266200-150280800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:150266400-150293400	Weak transcription	Psoas Muscle	Psoas
17	chr3:150266400-150302200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:150268200-150282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:150268600-150304000	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr3:150269400-150284000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr3:150269600-150279000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:150269800-150278800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:150272400-150280400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:150272400-150284600	Weak transcription	Brain Hippocampus Middle	brain
25	chr3:150272400-150293800	Weak transcription	Small Intestine	intestine
26	chr3:150272600-150282000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:150272600-150283800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:150272800-150280200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:150272800-150283000	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:150272800-150283400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:150272800-150286400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr3:150272800-150290400	Strong transcription	Dnd41	blood
33	chr3:150273200-150282400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:150273600-150285400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:150273800-150282800	Weak transcription	Fetal Kidney	kidney
36	chr3:150273800-150283000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:150274000-150278800	Strong transcription	Hela-S3	cervix
38	chr3:150274000-150280200	Weak transcription	Fetal Lung	lung
39	chr3:150274000-150281600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:150274000-150281600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:150274000-150281600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr3:150274000-150282000	Weak transcription	Osteobl	bone
43	chr3:150274000-150282200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr3:150274000-150282200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr3:150274000-150282400	Weak transcription	Placenta	Placenta
46	chr3:150274000-150282400	Weak transcription	HMEC	breast
47	chr3:150274000-150283000	Weak transcription	Fetal Muscle Leg	muscle
48	chr3:150274000-150283400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:150274000-150283600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:150274000-150283800	Weak transcription	Stomach Smooth Muscle	stomach

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