Variant report

Variant	rs6774750
Chromosome Location	chr3:150454637-150454638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150319886..150321731-chr3:150453531..150455986,2	K562	blood:
2	chr3:150451497..150454639-chr3:150460793..150463672,3	MCF-7	breast:
3	chr3:150445895..150450049-chr3:150452463..150456405,5	MCF-7	breast:
4	chr3:150440644..150442548-chr3:150452902..150455892,2	MCF-7	breast:
5	chr3:150454158..150457474-chr3:150459576..150462833,6	K562	blood:
6	chr3:149955465..149956755-chr3:150454327..150455540,5	MCF-7	breast:
7	chr3:150442966..150446319-chr3:150451835..150458890,10	K562	blood:
8	chr3:150452566..150460091-chr3:150475752..150483574,15	K562	blood:
9	chr3:150262901..150265286-chr3:150454601..150457225,2	MCF-7	breast:
10	chr3:150449791..150453661-chr3:150454357..150457851,6	K562	blood:
11	chr3:150450337..150459570-chr3:150476282..150483839,23	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SIAH2-1	chr3:150454551-150454809	NONHSAT092706

No data

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000244541	Chromatin interaction
ENSG00000198843	Chromatin interaction
ENSG00000244265	Chromatin interaction
ENSG00000144895	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1345083	1.00[EUR][1000 genomes]
rs16862718	1.00[EUR][1000 genomes]
rs58823857	1.00[EUR][1000 genomes]
rs6772881	1.00[EUR][1000 genomes]
rs6794743	1.00[EUR][1000 genomes]
rs73001325	1.00[EUR][1000 genomes]
rs73001336	1.00[EUR][1000 genomes]
rs73001339	1.00[EUR][1000 genomes]
rs73001358	1.00[EUR][1000 genomes]
rs73003034	1.00[EUR][1000 genomes]
rs73003079	1.00[EUR][1000 genomes]
rs73869298	1.00[EUR][1000 genomes]
rs73869299	1.00[EUR][1000 genomes]
rs73869301	1.00[EUR][1000 genomes]
rs7619908	1.00[EUR][1000 genomes]
rs935223	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150429200-150457600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:150430000-150455000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:150439800-150457600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:150442200-150455200	Weak transcription	Thymus	Thymus
6	chr3:150443200-150457800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:150444000-150457600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:150445000-150455000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:150446000-150455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:150446000-150458600	Weak transcription	Brain Substantia Nigra	brain
11	chr3:150446200-150455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:150446200-150458400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:150446800-150455000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:150448000-150457600	Weak transcription	Aorta	Aorta
15	chr3:150449400-150458400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:150450200-150455200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:150450200-150457400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:150451000-150457000	Enhancers	Fetal Heart	heart
19	chr3:150451000-150457600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:150451000-150457600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr3:150451200-150455000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:150451200-150456800	Enhancers	Left Ventricle	heart
23	chr3:150451200-150458400	Enhancers	Placenta	Placenta
24	chr3:150451400-150455200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:150451400-150455800	Weak transcription	HSMM	muscle
26	chr3:150451400-150456000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:150451400-150458800	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:150451400-150459200	Weak transcription	HSMMtube	muscle
29	chr3:150451400-150461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:150451600-150455600	Weak transcription	NH-A	brain
31	chr3:150451600-150455600	Weak transcription	NHDF-Ad	bronchial
32	chr3:150451600-150457800	Weak transcription	Fetal Stomach	stomach
33	chr3:150451800-150455200	Weak transcription	Osteobl	bone
34	chr3:150451800-150457000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:150451800-150457600	Weak transcription	Fetal Lung	lung
36	chr3:150451800-150459000	Weak transcription	Dnd41	blood
37	chr3:150451800-150462400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:150452200-150455000	Weak transcription	Stomach Mucosa	stomach
39	chr3:150452200-150455200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr3:150452200-150456000	Enhancers	K562	blood
41	chr3:150452600-150455600	Weak transcription	HMEC	breast
42	chr3:150452600-150457000	Enhancers	NHEK	skin
43	chr3:150452800-150455000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr3:150453200-150455400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:150453400-150455200	Weak transcription	Esophagus	oesophagus
46	chr3:150453400-150455400	Enhancers	Right Atrium	heart
47	chr3:150453400-150458400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr3:150453400-150458600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr3:150453400-150458600	Weak transcription	Brain Angular Gyrus	brain
50	chr3:150453400-150458600	Weak transcription	Brain Hippocampus Middle	brain

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