Variant report

Variant	rs58823857
Chromosome Location	chr3:150453971-150453972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150319886..150321731-chr3:150453531..150455986,2	K562	blood:
2	chr3:150451497..150454639-chr3:150460793..150463672,3	MCF-7	breast:
3	chr3:150445895..150450049-chr3:150452463..150456405,5	MCF-7	breast:
4	chr3:150440644..150442548-chr3:150452902..150455892,2	MCF-7	breast:
5	chr3:150442966..150446319-chr3:150451835..150458890,10	K562	blood:
6	chr3:150443385..150447273-chr3:150447378..150454336,8	K562	blood:
7	chr12:120638334..120640147-chr3:150451328..150454316,2	MCF-7	breast:
8	chr3:150452566..150460091-chr3:150475752..150483574,15	K562	blood:
9	chr3:150450337..150459570-chr3:150476282..150483839,23	K562	blood:

No data

Variant related genes	Relation type
ENSG00000181788	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000089157	Chromatin interaction
ENSG00000198843	Chromatin interaction
ENSG00000244265	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1345083	1.00[EUR][1000 genomes]
rs16862718	1.00[EUR][1000 genomes]
rs6772881	1.00[EUR][1000 genomes]
rs6774750	1.00[EUR][1000 genomes]
rs6794743	1.00[EUR][1000 genomes]
rs73001325	1.00[EUR][1000 genomes]
rs73001336	1.00[EUR][1000 genomes]
rs73001339	1.00[EUR][1000 genomes]
rs73001358	1.00[EUR][1000 genomes]
rs73003034	1.00[EUR][1000 genomes]
rs73003079	1.00[EUR][1000 genomes]
rs73869298	1.00[EUR][1000 genomes]
rs73869299	1.00[EUR][1000 genomes]
rs73869301	1.00[EUR][1000 genomes]
rs7619908	1.00[EUR][1000 genomes]
rs935223	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150429200-150457600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:150430000-150455000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:150430800-150454000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:150439800-150457600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:150442200-150455200	Weak transcription	Thymus	Thymus
7	chr3:150443200-150457800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:150443800-150454200	Weak transcription	Fetal Intestine Large	intestine
9	chr3:150444000-150457600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:150445000-150455000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr3:150446000-150454200	Weak transcription	Adipose Nuclei	Adipose
12	chr3:150446000-150455800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:150446000-150458600	Weak transcription	Brain Substantia Nigra	brain
14	chr3:150446200-150455400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:150446200-150458400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:150446800-150455000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:150448000-150457600	Weak transcription	Aorta	Aorta
18	chr3:150449400-150458400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:150450200-150455200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:150450200-150457400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:150451000-150457000	Enhancers	Fetal Heart	heart
22	chr3:150451000-150457600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:150451000-150457600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:150451200-150454600	Enhancers	Liver	Liver
25	chr3:150451200-150455000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:150451200-150456800	Enhancers	Left Ventricle	heart
27	chr3:150451200-150458400	Enhancers	Placenta	Placenta
28	chr3:150451400-150454400	Weak transcription	Gastric	stomach
29	chr3:150451400-150455200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:150451400-150455800	Weak transcription	HSMM	muscle
31	chr3:150451400-150456000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:150451400-150458800	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:150451400-150459200	Weak transcription	HSMMtube	muscle
34	chr3:150451400-150461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr3:150451600-150455600	Weak transcription	NH-A	brain
36	chr3:150451600-150455600	Weak transcription	NHDF-Ad	bronchial
37	chr3:150451600-150457800	Weak transcription	Fetal Stomach	stomach
38	chr3:150451800-150454200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr3:150451800-150454400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr3:150451800-150454600	Weak transcription	Ovary	ovary
41	chr3:150451800-150455200	Weak transcription	Osteobl	bone
42	chr3:150451800-150457000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:150451800-150457600	Weak transcription	Fetal Lung	lung
44	chr3:150451800-150459000	Weak transcription	Dnd41	blood
45	chr3:150451800-150462400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr3:150452000-150454200	Weak transcription	Right Ventricle	heart
47	chr3:150452000-150454400	Weak transcription	Spleen	Spleen
48	chr3:150452000-150454600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr3:150452200-150455000	Weak transcription	Stomach Mucosa	stomach
50	chr3:150452200-150455200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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