Variant report

Variant	rs16863260
Chromosome Location	chr3:150944284-150944285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59257241	1.00[AMR][1000 genomes]
rs60769061	1.00[AMR][1000 genomes]
rs6440741	1.00[YRI][hapmap]
rs6786015	0.80[AFR][1000 genomes]
rs73159929	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
2	chr3:150928800-150946200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:150929000-150945200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr3:150929200-150945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:150932600-150946200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:150935400-150946200	Weak transcription	Aorta	Aorta
9	chr3:150935600-150945200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:150935600-150945400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:150937800-150945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:150938200-150945800	Weak transcription	Fetal Heart	heart
13	chr3:150938600-150948600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:150939600-150945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:150939800-150945200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:150940000-150945400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:150940000-150945400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:150940000-150945400	Weak transcription	Fetal Intestine Small	intestine
19	chr3:150940400-150945800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:150941400-150945200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr3:150941600-150948000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr3:150941800-150945400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:150942000-150945200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:150942000-150946800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr3:150942200-150946000	Enhancers	Liver	Liver
26	chr3:150942200-150947000	Enhancers	Primary T cells from cord blood	blood
27	chr3:150942200-150948600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:150942400-150944600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:150942600-150945200	Weak transcription	Brain Anterior Caudate	brain
30	chr3:150942800-150945000	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:150942800-150945400	Enhancers	NH-A	brain
32	chr3:150942800-150946600	Enhancers	Primary T cells fromperipheralblood	blood
33	chr3:150942800-150947000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr3:150943000-150945200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr3:150943000-150946800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:150943000-150947800	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr3:150943200-150944600	Enhancers	Psoas Muscle	Psoas
38	chr3:150943200-150946600	Enhancers	Fetal Thymus	thymus
39	chr3:150943200-150948600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:150943400-150945800	Enhancers	A549	lung
41	chr3:150943600-150944400	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr3:150943600-150944600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr3:150943600-150945200	Enhancers	Hela-S3	cervix
44	chr3:150943600-150945400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr3:150943600-150945400	Enhancers	HepG2	liver
46	chr3:150943600-150946000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr3:150943600-150946600	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr3:150943600-150946600	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr3:150943800-150944400	Strong transcription	Primary B cells from cord blood	blood
50	chr3:150943800-150945400	Weak transcription	Adipose Nuclei	Adipose

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