Variant report

Variant	rs59257241
Chromosome Location	chr3:150951841-150951842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr3:150951697-150951862	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150919390..150921829-chr3:150951786..150954379,2	K562	blood:

Variant related genes	Relation type
ENSG00000266798	TF binding region
ENSG00000174946	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16863260	1.00[AMR][1000 genomes]
rs60769061	1.00[AMR][1000 genomes]
rs73159929	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:150946600-150957800	Weak transcription	Gastric	stomach
5	chr3:150946800-150956600	Weak transcription	Fetal Lung	lung
6	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:150948800-150952600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:150949000-150952600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:150949000-150953200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:150949000-150958400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:150949200-150952400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:150949200-150952400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:150949200-150952600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:150949200-150952600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:150949200-150952800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:150949200-150959200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:150949400-150952800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:150950000-150952200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:150950000-150966400	Weak transcription	Primary B cells from cord blood	blood
21	chr3:150951000-150954400	Enhancers	Colon Smooth Muscle	Colon
22	chr3:150951200-150957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:150951400-150952000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr3:150951400-150952800	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:150951600-150952000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:150951800-150953000	Enhancers	Rectal Smooth Muscle	rectum
27	chr3:150951800-150954200	Enhancers	Fetal Stomach	stomach

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