Variant report

Variant	rs60769061
Chromosome Location	chr3:150955915-150955916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16863260	1.00[AMR][1000 genomes]
rs59257241	1.00[AMR][1000 genomes]
rs73159929	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150946600-150957800	Weak transcription	Gastric	stomach
3	chr3:150946800-150956600	Weak transcription	Fetal Lung	lung
4	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:150949000-150958400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:150949200-150959200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:150950000-150966400	Weak transcription	Primary B cells from cord blood	blood
9	chr3:150951200-150957800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:150952800-150978400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr3:150953000-150959000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:150953200-150957800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:150953600-150959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:150953800-150983800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:150954200-150957800	Weak transcription	Fetal Stomach	stomach
16	chr3:150954400-150958200	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:150954600-150958800	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links