Variant report

Variant	rs16863388
Chromosome Location	chr3:151154200-151154201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:151154113..151155918-chr3:151159230..151162074,2	K562	blood:
2	chr3:151148352..151150918-chr3:151152937..151154700,2	K562	blood:
3	chr3:151154108..151155613-chr3:151160574..151163493,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AADACL2-4	chr3:151152537-151154465	NONHSAT092724

Variant related genes	Relation type
ENSG00000152580	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16863379	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs41401648	1.00[AFR][1000 genomes]
rs58424929	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6769724	1.00[AMR][1000 genomes]
rs6805923	1.00[MEX][hapmap]
rs7634747	1.00[MEX][hapmap]
rs7642603	1.00[AMR][1000 genomes]
rs937118	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9682027	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151106000-151154600	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:151129400-151162800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:151133400-151154800	Weak transcription	Fetal Brain Male	brain
4	chr3:151140200-151154400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:151140200-151157000	Weak transcription	Dnd41	blood
6	chr3:151143800-151154600	Weak transcription	Fetal Lung	lung
7	chr3:151144800-151155000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:151145000-151154600	Weak transcription	Ovary	ovary
9	chr3:151147200-151157800	Weak transcription	Aorta	Aorta
10	chr3:151148400-151161400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:151148800-151162400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:151150000-151156800	Weak transcription	Pancreas	Pancrea
13	chr3:151150400-151157200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:151150400-151158200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr3:151151200-151158400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:151152200-151154600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:151152200-151155000	Enhancers	NHLF	lung
18	chr3:151152600-151155000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:151152800-151155000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr3:151152800-151155600	Enhancers	NHDF-Ad	bronchial
21	chr3:151153200-151156000	Weak transcription	HSMM	muscle
22	chr3:151153200-151157200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:151153200-151157600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:151153200-151158200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:151153400-151154600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:151153400-151155000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:151153400-151157400	Weak transcription	A549	lung
28	chr3:151153400-151162600	Weak transcription	Osteobl	bone
29	chr3:151153600-151158400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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