Variant report

Variant	rs6805923
Chromosome Location	chr3:151038102-151038103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:151036661-151038260	MCF10A-Er-Src	breast:	n/a	chr3:151037129-151037138
2	POLR2A	chr3:151036579-151038362	MCF10A-Er-Src	breast:	n/a	n/a
3	CEBPB	chr3:151037954-151038293	HepG2	liver:	n/a	chr3:151038107-151038118
4	STAT3	chr3:151036785-151038372	MCF10A-Er-Src	breast:	n/a	chr3:151037531-151037540 chr3:151037886-151037894 chr3:151037650-151037658
5	JUND	chr3:151037203-151038202	SK-N-SH	brain:	n/a	n/a
6	CEBPB	chr3:151037927-151038288	Hela-S3	cervix:	n/a	chr3:151038107-151038118
7	FOS	chr3:151036733-151038284	MCF10A-Er-Src	breast:	n/a	chr3:151037129-151037138
8	CEBPB	chr3:151038068-151038159	K562	blood:	n/a	chr3:151038107-151038118
9	STAT3	chr3:151037365-151038281	MCF10A-Er-Src	breast:	n/a	chr3:151037531-151037540 chr3:151037886-151037894 chr3:151037650-151037658
10	FOS	chr3:151037362-151038282	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT1	chr3:151037203-151038653	Hela-S3	cervix:	n/a	chr3:151037531-151037540 chr3:151037886-151037894 chr3:151037650-151037658
12	POLR2A	chr3:151036673-151038278	MCF10A-Er-Src	breast:	n/a	n/a
13	STAT3	chr3:151036633-151038341	MCF10A-Er-Src	breast:	n/a	chr3:151037531-151037540 chr3:151037886-151037894 chr3:151037650-151037658
14	CEBPB	chr3:151038006-151038268	A549	lung:	n/a	chr3:151038107-151038118
15	MYC	chr3:151037489-151038379	MCF10A-Er-Src	breast:	n/a	chr3:151038161-151038177
16	STAT3	chr3:151037400-151038252	MCF10A-Er-Src	breast:	n/a	chr3:151037531-151037540 chr3:151037886-151037894 chr3:151037650-151037658
17	MYC	chr3:151037490-151038382	MCF10A-Er-Src	breast:	n/a	chr3:151038161-151038177
18	FOS	chr3:151036691-151038289	MCF10A-Er-Src	breast:	n/a	chr3:151037129-151037138

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151037228..151038869-chr3:151040809..151042718,2	MCF-7	breast:

Variant related genes	Relation type
GPR87	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11920315	1.00[EUR][1000 genomes]
rs11923394	1.00[EUR][1000 genomes]
rs16863261	1.00[MEX][hapmap]
rs16863308	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863379	1.00[MEX][hapmap]
rs16863388	1.00[MEX][hapmap]
rs1873621	1.00[EUR][1000 genomes]
rs35909778	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6440734	1.00[ASW][hapmap];0.87[MKK][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6769431	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6777432	1.00[MEX][hapmap];0.87[YRI][hapmap]
rs6794431	1.00[EUR][1000 genomes]
rs6797679	1.00[EUR][1000 genomes]
rs73006505	0.86[AFR][1000 genomes]
rs73006510	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73006518	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73006528	1.00[EUR][1000 genomes]
rs73023035	1.00[EUR][1000 genomes]
rs7626154	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7634747	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs937118	1.00[MEX][hapmap]
rs9682027	0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:151030400-151038400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:151031200-151038200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:151032200-151039200	Enhancers	Hela-S3	cervix
5	chr3:151034600-151039000	Enhancers	NHDF-Ad	bronchial
6	chr3:151034800-151038200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:151035000-151039800	Weak transcription	Placenta	Placenta
8	chr3:151035200-151039600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:151035400-151039000	Enhancers	NHLF	lung
10	chr3:151035800-151038400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:151035800-151038800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:151036000-151038600	Enhancers	Osteobl	bone
13	chr3:151036000-151044600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:151036200-151039000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:151036200-151043000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:151036600-151045200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:151037000-151038200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:151037000-151038600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:151037200-151044000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr3:151037400-151038200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:151037400-151038800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr3:151037400-151039000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:151037600-151038200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:151037600-151038200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:151037800-151038200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:151037800-151038200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:151037800-151038400	Flanking Active TSS	NHEK	skin
28	chr3:151037800-151039600	Enhancers	Adipose Nuclei	Adipose
29	chr3:151038000-151038400	Weak transcription	Primary B cells from cord blood	blood
30	chr3:151038000-151038600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr3:151038000-151038800	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr3:151038000-151039000	Enhancers	HMEC	breast

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