Variant report

Variant	rs6777432
Chromosome Location	chr3:150948660-150948661
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11923394	0.81[AFR][1000 genomes]
rs16863261	1.00[MEX][hapmap]
rs16863308	0.87[YRI][hapmap]
rs16863337	1.00[EUR][1000 genomes]
rs16863379	1.00[MEX][hapmap]
rs6782457	1.00[EUR][1000 genomes]
rs6801292	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6804600	1.00[EUR][1000 genomes]
rs6805923	1.00[MEX][hapmap];0.87[YRI][hapmap]
rs73008518	1.00[EUR][1000 genomes]
rs73023007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73023010	1.00[EUR][1000 genomes]
rs7634747	1.00[MEX][hapmap];0.91[YRI][hapmap]
rs937118	1.00[MEX][hapmap]
rs9682027	1.00[ASW][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:150946600-150950800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:150946600-150957800	Weak transcription	Gastric	stomach
6	chr3:150946800-150948800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:150946800-150951800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:150946800-150956600	Weak transcription	Fetal Lung	lung
9	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:150948000-150948800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:150948000-150948800	Enhancers	Fetal Thymus	thymus
13	chr3:150948000-150949000	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr3:150948000-150949000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr3:150948000-150949000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:150948000-150949000	Enhancers	Dnd41	blood
17	chr3:150948000-150949200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr3:150948000-150949200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:150948000-150949200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:150948000-150949200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr3:150948000-150949200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:150948000-150949200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr3:150948200-150948800	Enhancers	Brain Anterior Caudate	brain
24	chr3:150948200-150949000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:150948200-150949000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr3:150948200-150949000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
27	chr3:150948200-150949000	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr3:150948200-150949000	Flanking Active TSS	Primary B cells from peripheral blood	blood
29	chr3:150948200-150949000	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr3:150948200-150949000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:150948200-150949200	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr3:150948200-150949200	Enhancers	Colon Smooth Muscle	Colon
33	chr3:150948400-150948800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:150948400-150949000	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr3:150948400-150949000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr3:150948400-150949000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr3:150948400-150949000	Enhancers	Adipose Nuclei	Adipose
38	chr3:150948600-150948800	Enhancers	Primary T cells fromperipheralblood	blood
39	chr3:150948600-150948800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr3:150948600-150948800	Enhancers	Stomach Mucosa	stomach
41	chr3:150948600-150948800	Enhancers	HUVEC	blood vessel
42	chr3:150948600-150949000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr3:150948600-150949000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:150948600-150949000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:150948600-150949000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:150948600-150949000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr3:150948600-150949000	Flanking Active TSS	GM12878-XiMat	blood
48	chr3:150948600-150949200	Enhancers	H1 Cell Line	embryonic stem cell
49	chr3:150948600-150949200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr3:150948600-150949200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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