Variant report

Variant	rs9682027
Chromosome Location	chr3:150982785-150982786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150973802..150976430-chr3:150980938..150983221,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11920315	1.00[EUR][1000 genomes]
rs11923394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16863261	1.00[MEX][hapmap]
rs16863308	0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs16863379	1.00[MEX][hapmap]
rs16863388	1.00[MEX][hapmap]
rs1873621	1.00[EUR][1000 genomes]
rs35909778	1.00[EUR][1000 genomes]
rs6440734	1.00[EUR][1000 genomes]
rs6769431	1.00[EUR][1000 genomes]
rs6777432	1.00[ASW][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs6794431	1.00[EUR][1000 genomes]
rs6797679	1.00[EUR][1000 genomes]
rs6805923	0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs73006505	0.85[AFR][1000 genomes]
rs73006510	1.00[EUR][1000 genomes]
rs73006518	1.00[EUR][1000 genomes]
rs73006528	1.00[EUR][1000 genomes]
rs73023007	0.87[AFR][1000 genomes]
rs73023035	1.00[EUR][1000 genomes]
rs7626154	1.00[EUR][1000 genomes]
rs7634747	0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs937118	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:150953800-150983800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:150961200-150983600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:150971200-150983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:150973800-150983800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:150974000-150983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:150974400-150987600	Weak transcription	Aorta	Aorta
8	chr3:150974800-150983800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:150977000-150983600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:150977600-150984000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:150977800-151000000	Weak transcription	Placenta	Placenta
12	chr3:150978000-150983600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:150978600-150982800	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:150979400-150987600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:150980200-150982800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:150980200-150983000	Enhancers	NHDF-Ad	bronchial
17	chr3:150980200-150983400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:150980800-150983200	Enhancers	Fetal Lung	lung
19	chr3:150980800-150983600	Enhancers	Colon Smooth Muscle	Colon
20	chr3:150981000-150983600	Weak transcription	Spleen	Spleen
21	chr3:150981200-150984400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:150981400-150983400	Enhancers	Primary B cells from cord blood	blood
23	chr3:150981400-150984600	Enhancers	Fetal Stomach	stomach
24	chr3:150981400-150986800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr3:150981600-150983600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:150981600-150983600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:150981600-150986800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:150981800-150983400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr3:150981800-150986400	Enhancers	Rectal Smooth Muscle	rectum
30	chr3:150981800-150994000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:150982000-150984800	Enhancers	Brain Anterior Caudate	brain
32	chr3:150982000-150985200	Enhancers	Primary hematopoietic stem cells	blood
33	chr3:150982200-150983000	Enhancers	Brain Germinal Matrix	brain
34	chr3:150982400-150982800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:150982400-150982800	Enhancers	Left Ventricle	heart
36	chr3:150982400-150982800	Enhancers	Stomach Mucosa	stomach
37	chr3:150982400-150983000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:150982400-150983400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr3:150982400-150984000	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr3:150982400-150984800	Enhancers	Primary B cells from peripheral blood	blood
41	chr3:150982400-150985000	Enhancers	Stomach Smooth Muscle	stomach
42	chr3:150982600-150982800	Enhancers	Gastric	stomach
43	chr3:150982600-150983000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr3:150982600-150983200	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr3:150982600-150983800	Enhancers	Brain Cingulate Gyrus	brain
46	chr3:150982600-150984000	Enhancers	Fetal Thymus	thymus
47	chr3:150982600-150984600	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr3:150982600-150984600	Enhancers	Fetal Muscle Leg	muscle

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