Variant report

Variant	rs6440734
Chromosome Location	chr3:151024411-151024412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151021234..151025100-chr3:151041293..151045950,7	MCF-7	breast:
2	chr3:151011307..151016157-chr3:151019117..151025599,7	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11920315	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11923394	1.00[EUR][1000 genomes]
rs16863308	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1873621	1.00[EUR][1000 genomes]
rs35909778	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6769431	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6794431	1.00[EUR][1000 genomes]
rs6797679	1.00[EUR][1000 genomes]
rs6805923	1.00[ASW][hapmap];0.87[MKK][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73006510	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73006518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73006528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73023035	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7626154	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7634747	1.00[ASW][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9682027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:151021600-151024600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:151021600-151025800	Enhancers	Placenta	Placenta
4	chr3:151021600-151026600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:151021800-151024600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:151021800-151024800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:151022000-151024800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:151022000-151025200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:151022200-151024800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:151022400-151025200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:151022400-151025600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:151022400-151025800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr3:151022400-151026000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:151022400-151026200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:151022400-151026400	Enhancers	NHLF	lung
16	chr3:151022600-151024800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:151022600-151025400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:151022600-151026400	Enhancers	NHDF-Ad	bronchial
19	chr3:151022600-151026800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:151023000-151025400	Weak transcription	Esophagus	oesophagus
21	chr3:151023200-151024600	Enhancers	Brain Anterior Caudate	brain
22	chr3:151023200-151034600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:151023400-151024600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:151023400-151024600	Enhancers	A549	lung
25	chr3:151023400-151025200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr3:151023400-151027800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:151023600-151024600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:151023600-151024600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:151023600-151024800	Transcr. at gene 5' and 3'	NHEK	skin
30	chr3:151023600-151025000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:151023600-151027000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr3:151023800-151024600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:151023800-151024600	Enhancers	Osteobl	bone
34	chr3:151023800-151025000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr3:151023800-151026000	Enhancers	NH-A	brain
36	chr3:151024000-151024600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
37	chr3:151024000-151025600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr3:151024000-151026400	Enhancers	Placenta Amnion	Placenta Amnion
39	chr3:151024000-151026600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr3:151024000-151027200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:151024200-151024600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:151024400-151025000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:151024400-151027600	Enhancers	Hela-S3	cervix
44	chr3:151024400-151029000	Genic enhancers	HMEC	breast

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