Variant report

Variant	rs11920315
Chromosome Location	chr3:150999220-150999221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11923394	1.00[EUR][1000 genomes]
rs16863308	1.00[EUR][1000 genomes]
rs1873621	1.00[EUR][1000 genomes]
rs35909778	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6440734	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6769431	1.00[EUR][1000 genomes]
rs6794431	1.00[EUR][1000 genomes]
rs6797679	1.00[EUR][1000 genomes]
rs6805923	1.00[EUR][1000 genomes]
rs73006505	0.81[AFR][1000 genomes]
rs73006510	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73006518	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73006528	1.00[EUR][1000 genomes]
rs73023035	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7626154	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7634747	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9682027	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150977800-151000000	Weak transcription	Placenta	Placenta
2	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:150983800-151000600	Weak transcription	Brain Substantia Nigra	brain
4	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:150984600-151003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:150984600-151003600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:150994600-150999600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:150994600-151003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:150996200-151000200	Weak transcription	Brain Anterior Caudate	brain
10	chr3:150996200-151001000	Weak transcription	Stomach Mucosa	stomach
11	chr3:150996600-150999800	Weak transcription	NHDF-Ad	bronchial
12	chr3:150996600-151000600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:150997000-151001000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:150997000-151001000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:150997000-151001000	Weak transcription	Dnd41	blood
16	chr3:150997200-151001200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr3:150997200-151001600	Weak transcription	Fetal Lung	lung
18	chr3:150997400-151001200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr3:150997400-151001200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:150997600-150999400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr3:150997600-150999800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:150997600-151000800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:150997600-151001200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr3:150997600-151001800	Weak transcription	Fetal Stomach	stomach
25	chr3:150997800-150999600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:150998400-151001800	Weak transcription	Fetal Thymus	thymus
27	chr3:150998600-151000800	Weak transcription	Primary T cells from cord blood	blood
28	chr3:150998600-151001000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:150998800-151000400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:150998800-151000600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:150998800-151001200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:150999200-151002000	Enhancers	Colon Smooth Muscle	Colon

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