Variant report

Variant	rs16866978
Chromosome Location	chr2:180615165-180615166
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1139	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12052744	0.91[ASN][1000 genomes]
rs12052765	0.92[ASN][1000 genomes]
rs12053119	0.90[ASN][1000 genomes]
rs12473571	0.94[ASN][1000 genomes]
rs1385972	0.81[ASN][1000 genomes]
rs16866963	0.88[ASN][1000 genomes]
rs16866986	0.82[ASN][1000 genomes]
rs16866987	0.82[ASN][1000 genomes]
rs356407	0.93[ASN][1000 genomes]
rs356413	0.94[ASN][1000 genomes]
rs357699	0.85[ASN][1000 genomes]
rs55728092	0.92[ASN][1000 genomes]
rs57390308	0.89[ASN][1000 genomes]
rs58217303	0.96[ASN][1000 genomes]
rs7574345	0.81[ASN][1000 genomes]
rs7592797	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180610800-180621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180613600-180615600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:180614800-180615400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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