Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1139	0.86[ASN][1000 genomes]
rs12052765	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12053119	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12465379	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12466207	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12473571	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1385972	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16866963	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16866978	0.91[ASN][1000 genomes]
rs16866986	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16866987	0.88[ASN][1000 genomes]
rs16866989	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16866992	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28404240	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs356407	0.88[ASN][1000 genomes]
rs356413	0.92[ASN][1000 genomes]
rs357699	0.81[ASN][1000 genomes]
rs55728092	0.99[ASN][1000 genomes]
rs57390308	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58217303	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7574345	0.86[ASN][1000 genomes]
rs7592797	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7607561	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180621200-180624200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180622600-180623600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr2:180622600-180623600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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