Variant report

Variant	rs28404240
Chromosome Location	chr2:180652327-180652328
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12052744	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12052765	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12053119	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12465379	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12466207	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12473571	0.87[EUR][1000 genomes]
rs1385972	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16866963	0.87[EUR][1000 genomes]
rs16866986	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16866987	0.94[ASN][1000 genomes]
rs16866989	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16866992	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55728092	0.83[ASN][1000 genomes]
rs57390308	0.81[EUR][1000 genomes]
rs58217303	0.87[EUR][1000 genomes]
rs7574345	0.95[ASN][1000 genomes]
rs7592797	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7607561	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180652200-180652600	Active TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links