Variant report

Variant	rs16867845
Chromosome Location	chr6:30585333-30585334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:517)
CpG islands
(count:61)
Chromatin interactive
region (count:105)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:517 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr6:30585079-30585772	GM12878	blood:	n/a	chr6:30585188-30585201 chr6:30585263-30585276
2	MTA3	chr6:30585276-30586161	GM12878	blood:	n/a	n/a
3	TAF1	chr6:30584111-30586027	GM12878	blood:	n/a	n/a
4	MAFF	chr6:30583665-30585836	HepG2	liver:	n/a	n/a
5	SP1	chr6:30584722-30585781	GM12878	blood:	n/a	chr6:30585186-30585198 chr6:30585187-30585201 chr6:30585192-30585199 chr6:30585212-30585226 chr6:30585187-30585196 chr6:30585150-30585171
6	TEAD4	chr6:30581902-30586732	K562	blood:	n/a	n/a
7	POLR2A	chr6:30580372-30585867	H1-hESC	embryonic stem cell:	n/a	n/a
8	RELA	chr6:30584120-30585919	GM19099	blood:	n/a	n/a
9	MAZ	chr6:30584776-30585933	Hela-S3	cervix:	n/a	chr6:30585856-30585866
10	STAT3	chr6:30584835-30585781	MCF10A-Er-Src	breast:	n/a	chr6:30585223-30585231
11	ATF2	chr6:30582186-30586052	GM12878	blood:	n/a	n/a
12	GABPA	chr6:30584815-30585937	K562	blood:	n/a	chr6:30585334-30585348 chr6:30585591-30585605 chr6:30585337-30585346 chr6:30585337-30585348 chr6:30585337-30585351 chr6:30585238-30585247 chr6:30585591-30585602 chr6:30585339-30585348
13	POLR2A	chr6:30576348-30586731	PANC-1	pancreas:	n/a	n/a
14	EGR1	chr6:30585174-30585683	H1-hESC	embryonic stem cell:	n/a	chr6:30585238-30585247 chr6:30585338-30585347 chr6:30585287-30585296
15	NFYA	chr6:30584691-30585616	Hela-S3	cervix:	n/a	chr6:30585158-30585172 chr6:30585160-30585170 chr6:30585157-30585172 chr6:30585161-30585173 chr6:30585128-30585138 chr6:30585160-30585170 chr6:30585157-30585172 chr6:30585159-30585172
16	RELA	chr6:30583723-30586302	GM15510	blood:	n/a	n/a
17	POLR2A	chr6:30579350-30586587	HUVEC	blood vessel:	n/a	n/a
18	NFIC	chr6:30582006-30586341	HepG2	liver:	n/a	n/a
19	POLR2A	chr6:30579809-30585921	GM18951	blood:	n/a	n/a
20	POLR2A	chr6:30584363-30585937	ECC-1	luminal epithelium:	n/a	n/a
21	POLR2A	chr6:30581173-30585907	GM12878	blood:	n/a	n/a
22	MBD4	chr6:30585188-30586510	HepG2	liver:	n/a	n/a
23	SP1	chr6:30584609-30585991	A549	lung:	n/a	chr6:30585186-30585198 chr6:30585854-30585863 chr6:30585187-30585201 chr6:30585192-30585199 chr6:30585212-30585226 chr6:30585187-30585196 chr6:30585150-30585171
24	MAX	chr6:30584325-30586309	HCT-116	colon:	n/a	chr6:30585856-30585866
25	MEF2A	chr6:30584709-30585597	GM12878	blood:	n/a	chr6:30585361-30585376
26	YY1	chr6:30584296-30585962	H1-hESC	embryonic stem cell:	n/a	chr6:30585024-30585038 chr6:30584843-30584851
27	TBL1XR1	chr6:30582113-30586538	K562	blood:	n/a	n/a
28	POLR2A	chr6:30584392-30585875	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr6:30579457-30585959	SK-N-MC	brain:	n/a	n/a
30	POLR2A	chr6:30579823-30586558	K562	blood:	n/a	n/a
31	EGR1	chr6:30584434-30585353	K562	blood:	n/a	chr6:30585238-30585247 chr6:30585338-30585347 chr6:30585287-30585296
32	BRCA1	chr6:30582173-30585817	H1-hESC	embryonic stem cell:	n/a	chr6:30585098-30585107
33	RFX5	chr6:30584849-30585821	Hela-S3	cervix:	n/a	chr6:30585160-30585169
34	NFIC	chr6:30581686-30586080	GM12878	blood:	n/a	n/a
35	CREB1	chr6:30584761-30585717	ECC-1	luminal epithelium:	n/a	n/a
36	FOS	chr6:30584983-30585578	MCF10A-Er-Src	breast:	n/a	n/a
37	MAFF	chr6:30581909-30585905	K562	blood:	n/a	n/a
38	MAX	chr6:30584410-30586094	MCF-7	breast:	n/a	chr6:30585856-30585866
39	NR2F2	chr6:30584475-30586431	K562	blood:	n/a	n/a
40	TAF1	chr6:30584485-30585938	HepG2	liver:	n/a	n/a
41	MYC	chr6:30584853-30585976	HUVEC	blood vessel:	n/a	chr6:30585856-30585866
42	SIN3AK20	chr6:30584822-30586011	HepG2	liver:	n/a	n/a
43	RCOR1	chr6:30584801-30585939	K562	blood:	n/a	n/a
44	POLR2A	chr6:30576459-30586534	MCF10A-Er-Src	breast:	n/a	n/a
45	YY1	chr6:30584705-30586069	H1-hESC	embryonic stem cell:	n/a	chr6:30585024-30585038 chr6:30584843-30584851
46	SPI1	chr6:30585089-30585659	K562	blood:	n/a	chr6:30585188-30585201 chr6:30585263-30585276
47	YY1	chr6:30584758-30585929	K562	blood:	n/a	chr6:30585024-30585038 chr6:30584843-30584851
48	BHLHE40	chr6:30584504-30585871	K562	blood:	n/a	n/a
49	EGR1	chr6:30584700-30585760	GM12878	blood:	n/a	chr6:30585238-30585247 chr6:30585338-30585347 chr6:30585287-30585296
50	POLR2A	chr6:30579359-30585864	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30585293-30585343	Hela-S3	cervix:	n/a
2	chr6:30585293-30585343	HMEC	breast:	n/a
3	chr6:30585293-30585343	ECC-1	luminal epithelium:	n/a
4	chr6:30585293-30585343	SK-N-MC	brain:	n/a
5	chr6:30585293-30585343	RPTEC	kidney:	n/a
6	chr6:30585293-30585343	NHBE	bronchial:	n/a
7	chr6:30585293-30585343	GM12892	blood:	n/a
8	chr6:30585293-30585343	AG10803	skin:	n/a
9	chr6:30585293-30585343	IMR90	lung:	fetal
10	chr6:30585293-30585343	AG04450	lung:	fetal
11	chr6:30585293-30585343	LNCaP	prostate:	n/a
12	chr6:30585293-30585343	BE2_C	brain:	n/a
13	chr6:30585293-30585343	T-47D	breast:	n/a
14	chr6:30585293-30585343	HepG2	liver:	n/a
15	chr6:30585293-30585343	Jurkat	blood:	n/a
16	chr6:30585293-30585343	MCF10A-Er-Src	breast:	n/a
17	chr6:30585293-30585343	HPAEpiC	pulmonary alveolar:	n/a
18	chr6:30585293-30585343	NHDF-neo	bronchial:	n/a
19	chr6:30585293-30585343	SAEC	small airway:	n/a
20	chr6:30585293-30585343	PrEC	prostate:	n/a
21	chr6:30585293-30585343	NB4	blood:	n/a
22	chr6:30585293-30585343	GM06990	blood:	n/a
23	chr6:30585293-30585343	AG09309	skin:	n/a
24	chr6:30585293-30585343	A549	lung:	n/a
25	chr6:30585293-30585343	GM19239	blood:	n/a
26	chr6:30585293-30585343	CMK	blood:	n/a
27	chr6:30585293-30585343	PANC-1	pancreas:	n/a
28	chr6:30585293-30585343	HAEpiC	amniotic membrane:	n/a
29	chr6:30585293-30585343	HEK293	kidney:	embryo
30	chr6:30585293-30585343	HEEpiC	esophagus:	n/a
31	chr6:30585293-30585343	AoSMC	blood vessel:	n/a
32	chr6:30585293-30585343	NT2-D1	testis:	n/a
33	chr6:30585293-30585343	PFSK-1	brain:	n/a
34	chr6:30585293-30585343	NH-A	brain:	n/a
35	chr6:30585293-30585343	Hepatocyte	liver:	n/a
36	chr6:30585293-30585343	H1-hESC	embryonic stem cell:	embryo
37	chr6:30585293-30585343	AG09319	gingival:	n/a
38	chr6:30585293-30585343	AG04449	skin:	fetal
39	chr6:30585293-30585343	ProgFib	skin:	n/a
40	chr6:30585293-30585343	HNPCEpiC	eye:	n/a
41	chr6:30585293-30585343	HCM	heart:	n/a
42	chr6:30585293-30585343	HRPEpiC	eye:	n/a
43	chr6:30585293-30585343	HIPEpiC	eye:	n/a
44	chr6:30585293-30585343	SK-N-SH_RA	brain:	n/a
45	chr6:30585293-30585343	ovcar-3	ovarian:	n/a
46	chr6:30585293-30585343	HCPEpiC	choroid plexus:	n/a
47	chr6:30585293-30585343	GM12878	blood:	n/a
48	chr6:30585293-30585343	HCT-116	colon:	n/a
49	chr6:30585293-30585343	HUVEC	blood vessel:	n/a
50	chr6:30585293-30585343	BJ	skin:	n/a

(count:105 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:30580498..30587281-chr6:30649167..30662031,51	K562	blood:
2	chr19:5622353..5623202-chr6:30584809..30585517,2	Hela-S3	cervix:
3	chr6:30582838..30585806-chr6:31497369..31500539,3	K562	blood:
4	chr2:9695642..9696536-chr6:30584846..30585654,2	Hela-S3	cervix:
5	chr6:30456489..30460489-chr6:30579571..30585514,7	K562	blood:
6	chr6:30584693..30585415-chr8:33370924..33371619,2	Hela-S3	cervix:
7	chr6:30481743..30485761-chr6:30582102..30585444,5	K562	blood:
8	chr6:30584692..30585507-chr6:35226872..35227816,2	Hela-S3	cervix:
9	chr2:38829682..38830337-chr6:30584610..30585394,2	Hela-S3	cervix:
10	chr1:167522541..167523123-chr6:30584693..30585339,2	Hela-S3	cervix:
11	chr12:92539200..92539882-chr6:30584829..30585663,2	Hela-S3	cervix:
12	chr10:70715065..70716341-chr6:30584812..30585732,3	Hela-S3	cervix:
13	chr6:30577773..30589670-chr6:30680333..30700280,58	MCF-7	breast:
14	chr16:8962349..8963161-chr6:30584703..30585475,2	Hela-S3	cervix:
15	chr19:13227378..13229135-chr6:30583269..30585986,2	K562	blood:
16	chr6:30293494..30295921-chr6:30584661..30586515,2	K562	blood:
17	chr6:30584904..30585735-chrX:102630893..102631862,2	Hela-S3	cervix:
18	chr5:43514388..43515180-chr6:30584693..30585401,2	Hela-S3	cervix:
19	chr6:30583697..30586292-chr6:30616781..30618296,2	MCF-7	breast:
20	chr6:30585321..30586075-chr6:35419788..35420370,2	HCT-116	colon:
21	chr6:30581806..30587588-chr6:30850201..30854112,13	MCF-7	breast:
22	chr3:49058396..49059389-chr6:30584621..30585400,2	Hela-S3	cervix:
23	chr6:30455822..30466395-chr6:30579571..30587610,27	K562	blood:
24	chr17:56709009..56710623-chr6:30584971..30586605,2	MCF-7	breast:
25	chr6:30580645..30587403-chr6:30708153..30714600,16	MCF-7	breast:
26	chr6:30577862..30587208-chr6:30682997..30696247,43	MCF-7	breast:
27	chr10:119134560..119135269-chr6:30585199..30586018,2	Hela-S3	cervix:
28	chr6:30584559..30585389-chrX:41193343..41193923,2	NB4	blood:
29	chr16:87984268..87986838-chr6:30583707..30586082,2	MCF-7	breast:
30	chr6:30582891..30586139-chr6:30656870..30660301,3	MCF-7	breast:
31	chr1:27114281..27115133-chr6:30584986..30585760,2	Hela-S3	cervix:
32	chr6:30577127..30589352-chr6:30620628..30648657,88	K562	blood:
33	chr6:30452366..30463564-chr6:30577885..30586736,19	MCF-7	breast:
34	chr17:75136539..75137150-chr6:30584980..30585690,2	Hela-S3	cervix:
35	chr6:30537301..30541414-chr6:30578056..30586798,20	MCF-7	breast:
36	chr4:56814876..56815558-chr6:30584657..30585422,2	Hela-S3	cervix:
37	chr18:12947622..12948398-chr6:30584786..30585619,2	Hela-S3	cervix:
38	chr17:56708831..56709428-chr6:30584846..30585371,2	HCT-116	colon:
39	chr6:27112214..27114715-chr6:30582848..30585479,2	K562	blood:
40	chr6:30584781..30585342-chrX:133594003..133594776,2	Hela-S3	cervix:
41	chr6:30583469..30585601-chr6:30664144..30665970,2	K562	blood:
42	chr6:30581875..30586807-chr6:30843879..30846748,7	K562	blood:
43	chr6:30583409..30587215-chr6:30748473..30750740,4	K562	blood:
44	chr6:30583713..30586617-chr6:30879172..30881064,2	MCF-7	breast:
45	chr6:30520810..30527475-chr6:30577152..30588201,32	MCF-7	breast:
46	chr6:30293501..30295806-chr6:30583692..30586477,2	MCF-7	breast:
47	chr18:60189855..60190621-chr6:30584635..30585443,2	Hela-S3	cervix:
48	chr14:35871325..35873327-chr6:30583135..30585766,2	MCF-7	breast:
49	chr19:39897014..39897777-chr6:30584689..30585542,2	Hela-S3	cervix:
50	chr15:43425568..43426223-chr6:30584868..30585413,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000222894	TF binding region
MRPS18B	TF binding region
PPP1R10	TF binding region
PPP1R10	CpG island
ENSG00000222894	CpG island
MRPS18B	CpG island
ENSG00000204438	Chromatin interaction
ENSG00000137411	Chromatin interaction
ENSG00000120738	Chromatin interaction
ENSG00000111540	Chromatin interaction
ENSG00000153048	Chromatin interaction
ENSG00000201801	Chromatin interaction
ENSG00000214293	Chromatin interaction
ENSG00000137842	Chromatin interaction
ENSG00000222895	Chromatin interaction
ENSG00000166681	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000137310	Chromatin interaction
ENSG00000245904	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000165650	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000151093	Chromatin interaction
ENSG00000227963	Chromatin interaction
ENSG00000151092	Chromatin interaction
ENSG00000177463	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000129657	Chromatin interaction
ENSG00000134318	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000151694	Chromatin interaction
ENSG00000204564	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000228395	Chromatin interaction
ENSG00000272540	Chromatin interaction
ENSG00000161847	Chromatin interaction
ENSG00000133639	Chromatin interaction
ENSG00000135245	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204592	Chromatin interaction
ENSG00000213780	Chromatin interaction
ENSG00000266183	Chromatin interaction
ENSG00000271855	Chromatin interaction
ENSG00000261481	Chromatin interaction
ENSG00000260879	Chromatin interaction
ENSG00000228415	Chromatin interaction
ENSG00000255717	Chromatin interaction
ENSG00000187257	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000104907	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000228022	Chromatin interaction
ENSG00000182718	Chromatin interaction
ENSG00000204560	Chromatin interaction
ENSG00000230449	Chromatin interaction
ENSG00000204536	Chromatin interaction
ENSG00000137331	Chromatin interaction
ENSG00000197694	Chromatin interaction
ENSG00000160877	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000137343	Chromatin interaction
ENSG00000204576	Chromatin interaction
ENSG00000107372	Chromatin interaction
ENSG00000143889	Chromatin interaction
ENSG00000128016	Chromatin interaction
ENSG00000164687	Chromatin interaction
ENSG00000141905	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000172244	Chromatin interaction
ENSG00000273184	Chromatin interaction
ENSG00000204590	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000129696	Chromatin interaction
ENSG00000241370	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000085415	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000181163	Chromatin interaction
ENSG00000137404	Chromatin interaction
ENSG00000178149	Chromatin interaction
ENSG00000225733	Chromatin interaction
ENSG00000215301	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000100650	Chromatin interaction
ENSG00000235781	Chromatin interaction
ENSG00000130254	Chromatin interaction
ENSG00000149016	Chromatin interaction
ENSG00000051180	Chromatin interaction
ENSG00000245849	Chromatin interaction
ENSG00000165704	Chromatin interaction
ENSG00000239039	Chromatin interaction
ENSG00000085491	Chromatin interaction
ENSG00000229068	Chromatin interaction
ENSG00000254027	Chromatin interaction
ENSG00000204574	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000172530	Chromatin interaction
ENSG00000165732	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000146112	Chromatin interaction
ENSG00000240758	Chromatin interaction
ENSG00000174799	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000143162	Chromatin interaction
ENSG00000141664	Chromatin interaction
ENSG00000160633	Chromatin interaction
ENSG00000178057	Chromatin interaction
ENSG00000162775	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000147649	Chromatin interaction
ENSG00000203875	Chromatin interaction
ENSG00000236603	Chromatin interaction
ENSG00000137337	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000060642	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs17189120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17189134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17189155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195411	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17195474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195544	0.86[AFR][1000 genomes]
rs2106069	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270172	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2302347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394387	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2394388	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2394389	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3815101	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3888777	0.83[AMR][1000 genomes]
rs4148247	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57626358	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58423891	0.94[ASN][1000 genomes]
rs59272830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59607822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59913575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60081418	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60365864	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60399658	0.88[ASN][1000 genomes]
rs61733213	0.88[ASN][1000 genomes]
rs6457246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899769	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899862	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6901251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911174	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917434	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927727	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6934466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742754	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749109	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749978	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773711	0.88[ASN][1000 genomes]
rs9262120	1.00[ASN][1000 genomes]
rs9468812	0.88[ASN][1000 genomes]
rs9468821	0.82[ASN][1000 genomes]
rs9468822	0.82[ASN][1000 genomes]
rs9468823	0.82[ASN][1000 genomes]
rs9500865	0.82[ASN][1000 genomes]
rs9671	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
4	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
5	esv3430377	chr6:30443802-30814426	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	967 gene(s)	inside rSNPs	diseases
6	nsv884086	chr6:30462084-30672757	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	798 gene(s)	inside rSNPs	diseases
7	nsv884091	chr6:30526026-30590646	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	776 gene(s)	inside rSNPs	diseases
8	nsv5244	chr6:30545111-30589803	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	772 gene(s)	inside rSNPs	diseases
9	nsv830626	chr6:30558064-30732905	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	406 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16867845	PRR3	cis	lymphoblastoid	seeQTL
rs16867845	MRPS18B	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30581800-30586600	Active TSS	Right Ventricle	heart
2	chr6:30582000-30586600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:30582200-30586400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:30582200-30586400	Active TSS	Esophagus	oesophagus
5	chr6:30582200-30586400	Active TSS	Lung	lung
6	chr6:30582200-30586400	Active TSS	Ovary	ovary
7	chr6:30582400-30586600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:30582400-30586600	Active TSS	Gastric	stomach
9	chr6:30582400-30586800	Active TSS	Psoas Muscle	Psoas
10	chr6:30582600-30585800	Active TSS	Primary T cells from cord blood	blood
11	chr6:30582600-30586000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:30582600-30586200	Active TSS	Placenta Amnion	Placenta Amnion
13	chr6:30582600-30586400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:30582600-30586400	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr6:30582600-30586600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr6:30582600-30587000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:30583000-30586000	ZNF genes & repeats	Fetal Brain Male	brain
18	chr6:30583200-30586200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:30583400-30585800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
20	chr6:30583400-30586000	Active TSS	Aorta	Aorta
21	chr6:30583600-30586600	Bivalent/Poised TSS	HepG2	liver
22	chr6:30583800-30586200	Active TSS	Spleen	Spleen
23	chr6:30584200-30586400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:30584200-30586400	Active TSS	Hela-S3	cervix
25	chr6:30584400-30586200	Active TSS	HUVEC	blood vessel
26	chr6:30584600-30585800	Transcr. at gene 5' and 3'	Right Atrium	heart
27	chr6:30584600-30586000	Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr6:30584800-30585800	Active TSS	Primary neutrophils fromperipheralblood	blood
29	chr6:30584800-30585800	Active TSS	Primary B cells from cord blood	blood
30	chr6:30584800-30586000	Active TSS	Primary monocytes fromperipheralblood	blood
31	chr6:30584800-30586000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr6:30584800-30586000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:30584800-30586000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr6:30584800-30586000	Active TSS	Adipose Nuclei	Adipose
35	chr6:30584800-30586000	Active TSS	Liver	Liver
36	chr6:30584800-30586000	Active TSS	Brain Hippocampus Middle	brain
37	chr6:30584800-30586000	Active TSS	Colon Smooth Muscle	Colon
38	chr6:30584800-30586000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr6:30584800-30586000	Active TSS	Monocytes-CD14+_RO01746	blood
40	chr6:30584800-30586000	Active TSS	NH-A	brain
41	chr6:30584800-30586200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:30584800-30586200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:30584800-30586200	Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr6:30584800-30586200	Active TSS	Fetal Muscle Trunk	muscle
45	chr6:30584800-30586200	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr6:30584800-30586200	Active TSS	Small Intestine	intestine
47	chr6:30584800-30586400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:30584800-30586400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:30584800-30586400	Active TSS	Brain Angular Gyrus	brain
50	chr6:30584800-30586400	Active TSS	Fetal Intestine Large	intestine

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Variant report

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