Variant report

Variant	rs16868635
Chromosome Location	chr5:16467413-16467414
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr5:16467167-16468010	GM12878	blood:	n/a	n/a
2	NFIC	chr5:16467212-16468008	GM12878	blood:	n/a	n/a
3	FOS	chr5:16467413-16468306	MCF10A-Er-Src	breast:	n/a	n/a
4	PML	chr5:16467282-16468091	GM12878	blood:	n/a	n/a
5	ELF1	chr5:16467274-16467600	K562	blood:	n/a	chr5:16467451-16467464
6	MEF2A	chr5:16467332-16467931	GM12878	blood:	n/a	n/a
7	RUNX3	chr5:16467311-16468145	GM12878	blood:	n/a	n/a
8	JUN	chr5:16467105-16467740	K562	blood:	n/a	n/a
9	FOS	chr5:16467287-16468327	MCF10A-Er-Src	breast:	n/a	n/a
10	BCLAF1	chr5:16467063-16468041	GM12878	blood:	n/a	n/a
11	NR3C1	chr5:16467402-16468189	A549	lung:	n/a	n/a
12	ATF2	chr5:16467271-16468036	GM12878	blood:	n/a	n/a
13	RCOR1	chr5:16467095-16467960	K562	blood:	n/a	n/a
14	NFATC1	chr5:16467366-16467981	GM12878	blood:	n/a	n/a
15	MAZ	chr5:16467240-16467564	K562	blood:	n/a	n/a
16	POLR2A	chr5:16467395-16467724	MCF10A-Er-Src	breast:	n/a	n/a
17	ATF2	chr5:16467105-16467988	GM12878	blood:	n/a	n/a
18	POLR2A	chr5:16467060-16468255	GM12891	blood:	n/a	n/a
19	PBX3	chr5:16467355-16467969	SK-N-SH	brain:	n/a	n/a
20	NFIC	chr5:16467280-16468183	GM12878	blood:	n/a	n/a
21	BHLHE40	chr5:16467147-16467415	K562	blood:	n/a	n/a
22	FOXM1	chr5:16467365-16468031	GM12878	blood:	n/a	n/a
23	POLR2A	chr5:16467162-16467885	Hela-S3	cervix:	n/a	n/a
24	FOSL2	chr5:16467397-16468353	SK-N-SH	brain:	n/a	n/a
25	CEBPB	chr5:16467284-16467985	GM12878	blood:	n/a	n/a
26	IRF4	chr5:16467409-16467960	GM12878	blood:	n/a	n/a
27	NFATC1	chr5:16467225-16468033	GM12878	blood:	n/a	n/a
28	POLR2A	chr5:16463684-16468670	K562	blood:	n/a	n/a
29	MTA3	chr5:16467098-16468194	GM12878	blood:	n/a	n/a
30	POLR2A	chr5:16467209-16468090	MCF10A-Er-Src	breast:	n/a	n/a
31	JUND	chr5:16467353-16468150	K562	blood:	n/a	n/a
32	MAFK	chr5:16467067-16467867	K562	blood:	n/a	n/a
33	MEF2C	chr5:16467317-16467927	GM12878	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:16447910..16449691-chr5:16466870..16468860,2	MCF-7	breast:
2	chr5:16466045..16468627-chr5:16547645..16550554,2	K562	blood:
3	chr5:16177598..16179739-chr5:16465554..16467569,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXL7-10	chr5:16465900-16468802	NONHSAT100606

No data

Variant related genes	Relation type
ZNF622	TF binding region
ENSG00000183654	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16868633	0.85[MKK][hapmap]
rs16868646	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868681	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868682	1.00[ASW][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2401881	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3849103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733811	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16463400-16467600	Active TSS	HSMMtube	muscle
2	chr5:16463800-16468000	Active TSS	Left Ventricle	heart
3	chr5:16464000-16468200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr5:16464400-16468200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:16466400-16468000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr5:16466600-16467600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
7	chr5:16466600-16467800	Weak transcription	Esophagus	oesophagus
8	chr5:16466600-16468200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:16466600-16468200	Enhancers	Spleen	Spleen
10	chr5:16466600-16468200	Flanking Active TSS	Dnd41	blood
11	chr5:16466800-16467600	Enhancers	Ovary	ovary
12	chr5:16466800-16467600	Enhancers	Thymus	Thymus
13	chr5:16466800-16467800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr5:16466800-16467800	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:16466800-16467800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:16466800-16468000	Enhancers	Primary hematopoietic stem cells	blood
17	chr5:16466800-16468000	Enhancers	Fetal Thymus	thymus
18	chr5:16466800-16468200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:16466800-16468200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:16466800-16468200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:16466800-16468200	Enhancers	Primary B cells from peripheral blood	blood
22	chr5:16466800-16468200	Enhancers	Primary T cells from cord blood	blood
23	chr5:16466800-16468200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr5:16466800-16468200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr5:16466800-16468200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr5:16466800-16468200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:16466800-16468200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:16466800-16468200	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr5:16466800-16468200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr5:16466800-16468200	Enhancers	Liver	Liver
31	chr5:16466800-16468200	Enhancers	Fetal Lung	lung
32	chr5:16466800-16468200	Enhancers	Gastric	stomach
33	chr5:16466800-16468200	Enhancers	Lung	lung
34	chr5:16466800-16468200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr5:16466800-16468200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr5:16466800-16468200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr5:16466800-16468200	Enhancers	Small Intestine	intestine
38	chr5:16466800-16468200	Flanking Active TSS	HMEC	breast
39	chr5:16466800-16468400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr5:16466800-16468400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr5:16466800-16468400	Enhancers	HUVEC	blood vessel
42	chr5:16466800-16469200	Weak transcription	Aorta	Aorta
43	chr5:16466800-16470200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:16466800-16471000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:16466800-16477400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr5:16467000-16467600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:16467000-16467600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr5:16467000-16467600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:16467000-16467600	Enhancers	Fetal Stomach	stomach
50	chr5:16467000-16467600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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