Variant report

Variant	rs16868682
Chromosome Location	chr5:16482860-16482861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr5:16482536-16483969	PBDE	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:16473403..16475973-chr5:16481305..16483027,3	K562	blood:
2	chr5:16462727..16467937-chr5:16482313..16486041,6	MCF-7	breast:
3	chr5:16482049..16483952-chr5:16545895..16548159,2	MCF-7	breast:

Variant related genes	Relation type
FAM134B	TF binding region
ENSG00000173545	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16868635	1.00[ASW][hapmap];0.89[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16868681	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2401881	1.00[ASW][hapmap];0.84[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3849103	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61733811	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16468200-16483200	Weak transcription	A549	lung
2	chr5:16468200-16483400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:16468200-16484000	Weak transcription	Small Intestine	intestine
4	chr5:16468200-16485000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:16468200-16487400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:16468200-16489600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr5:16468200-16490800	Weak transcription	Right Ventricle	heart
8	chr5:16468400-16493000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:16469800-16489800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:16470000-16486800	Weak transcription	Brain Angular Gyrus	brain
11	chr5:16470000-16486800	Weak transcription	Gastric	stomach
12	chr5:16470000-16486800	Weak transcription	Pancreas	Pancrea
13	chr5:16470000-16486800	Weak transcription	Psoas Muscle	Psoas
14	chr5:16470000-16490200	Weak transcription	Fetal Muscle Leg	muscle
15	chr5:16470400-16489000	Weak transcription	Fetal Brain Male	brain
16	chr5:16472800-16483400	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr5:16475400-16483800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:16475400-16495200	Weak transcription	Thymus	Thymus
19	chr5:16475800-16488800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr5:16477600-16486800	Weak transcription	Left Ventricle	heart
21	chr5:16477600-16493000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr5:16478200-16493400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr5:16480600-16487400	Enhancers	Fetal Intestine Small	intestine
24	chr5:16480600-16491200	Enhancers	Fetal Intestine Large	intestine
25	chr5:16481200-16483000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:16481400-16486600	Weak transcription	Liver	Liver
27	chr5:16481600-16483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:16481600-16483400	Weak transcription	HMEC	breast
29	chr5:16481600-16483400	Weak transcription	NHEK	skin
30	chr5:16481600-16489600	Weak transcription	HSMMtube	muscle
31	chr5:16481800-16483400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr5:16481800-16483800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr5:16481800-16486800	Weak transcription	Primary T cells from cord blood	blood
34	chr5:16482000-16484000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:16482600-16483000	Enhancers	Fetal Heart	heart
36	chr5:16482600-16484400	Enhancers	Duodenum Mucosa	Duodenum
37	chr5:16482800-16494800	Enhancers	Rectal Mucosa Donor 31	rectum

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