Variant report

Variant	rs16869676
Chromosome Location	chr8:103656997-103656998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103593692..103596559-chr8:103655567..103657440,2	K562	blood:
2	chr8:103611739..103615321-chr8:103653896..103661701,12	MCF-7	breast:
3	chr8:103653489..103674518-chr8:103809987..103832119,275	MCF-7	breast:
4	chr8:103644446..103678119-chr8:103815618..103829807,419	MCF-7	breast:
5	chr8:103653546..103657405-chr8:103873779..103877685,3	MCF-7	breast:
6	chr8:103656192..103659911-chr8:103661588..103665450,4	K562	blood:
7	chr8:103448154..103449973-chr8:103656128..103658488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000253669	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10955288	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap]
rs12544257	1.00[CEU][hapmap]
rs12546601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547574	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12547834	0.87[CEU][hapmap]
rs12548858	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12549399	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12674646	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12674767	0.85[CHB][hapmap]
rs12675196	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12675239	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12680362	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12680598	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12680908	0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12682093	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318752	0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs16869664	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs16869695	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs16869724	0.81[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2053128	0.91[CHB][hapmap]
rs2388192	0.83[ASN][1000 genomes]
rs2436946	0.89[ASN][1000 genomes]
rs2471847	0.93[ASN][1000 genomes]
rs2511701	0.83[GIH][hapmap];0.81[JPT][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs2511718	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2511719	0.93[ASN][1000 genomes]
rs2511730	0.93[ASN][1000 genomes]
rs2734824	0.89[ASN][1000 genomes]
rs2916570	0.92[ASN][1000 genomes]
rs3018443	0.90[EUR][1000 genomes]
rs56929055	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60320584	0.84[ASN][1000 genomes]
rs72685109	0.85[ASN][1000 genomes]
rs72685110	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72685117	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72685118	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72685123	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72685128	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73276712	0.81[AFR][1000 genomes]
rs73276716	0.81[AFR][1000 genomes]
rs73276720	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9642792	0.87[ASN][1000 genomes]
rs980112	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103644800-103659600	Weak transcription	Spleen	Spleen
2	chr8:103645600-103660000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:103647000-103661600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:103647000-103662000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:103647000-103662000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:103648200-103661800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:103649000-103659800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:103649600-103659800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:103649800-103662000	Weak transcription	Fetal Stomach	stomach
10	chr8:103650000-103659600	Weak transcription	Placenta	Placenta
11	chr8:103650200-103660000	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:103652400-103659600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr8:103652400-103659800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:103652600-103659600	Weak transcription	Fetal Intestine Small	intestine
15	chr8:103652600-103659800	Weak transcription	Fetal Intestine Large	intestine
16	chr8:103654000-103659600	Weak transcription	Aorta	Aorta
17	chr8:103654000-103659800	Weak transcription	Lung	lung
18	chr8:103654000-103662200	Weak transcription	Gastric	stomach
19	chr8:103654400-103662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:103654800-103659800	Weak transcription	A549	lung
21	chr8:103654800-103661200	Weak transcription	HepG2	liver
22	chr8:103655200-103659800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:103655200-103661800	Weak transcription	Brain Germinal Matrix	brain
24	chr8:103655400-103657200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr8:103655400-103659800	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:103655600-103659000	Weak transcription	Left Ventricle	heart
27	chr8:103655800-103657000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:103655800-103659800	Weak transcription	Psoas Muscle	Psoas
29	chr8:103655800-103661000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:103656000-103659000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:103656000-103662200	Weak transcription	Fetal Brain Female	brain
32	chr8:103656200-103659200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:103656200-103659600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:103656600-103659800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:103656600-103659800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:103656600-103659800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr8:103656600-103662000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:103656800-103661800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:103656800-103663200	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links