Variant report

Variant	rs9642792
Chromosome Location	chr8:103642893-103642894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12546601	0.87[ASN][1000 genomes]
rs12547574	0.83[ASN][1000 genomes]
rs12674646	0.83[ASN][1000 genomes]
rs12675196	0.89[ASN][1000 genomes]
rs12675239	0.89[ASN][1000 genomes]
rs12680362	0.81[ASN][1000 genomes]
rs12680598	0.83[ASN][1000 genomes]
rs12682093	0.87[ASN][1000 genomes]
rs1318752	0.96[ASN][1000 genomes]
rs16869664	0.91[ASN][1000 genomes]
rs16869676	0.87[ASN][1000 genomes]
rs16869695	0.81[ASN][1000 genomes]
rs2388192	0.94[ASN][1000 genomes]
rs2511718	0.80[ASN][1000 genomes]
rs2511719	0.80[ASN][1000 genomes]
rs2511730	0.80[ASN][1000 genomes]
rs35509459	0.87[ASN][1000 genomes]
rs55750587	0.89[ASN][1000 genomes]
rs56398883	0.90[ASN][1000 genomes]
rs56929055	0.88[ASN][1000 genomes]
rs60320584	0.96[ASN][1000 genomes]
rs72683098	0.87[ASN][1000 genomes]
rs72683100	0.87[ASN][1000 genomes]
rs72683101	0.89[ASN][1000 genomes]
rs72683102	0.89[ASN][1000 genomes]
rs72685103	0.90[ASN][1000 genomes]
rs72685104	0.91[ASN][1000 genomes]
rs72685109	0.96[ASN][1000 genomes]
rs72685110	0.89[ASN][1000 genomes]
rs72685117	0.85[ASN][1000 genomes]
rs72685118	0.83[ASN][1000 genomes]
rs72685123	0.83[ASN][1000 genomes]
rs72685128	0.83[ASN][1000 genomes]
rs73276720	0.84[ASN][1000 genomes]
rs9642791	0.87[ASN][1000 genomes]
rs9642979	0.87[ASN][1000 genomes]
rs980112	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:103640200-103645200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:103640600-103644600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
8	chr8:103641200-103644400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:103641200-103644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:103642400-103644400	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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