Variant report

Variant	rs72685103
Chromosome Location	chr8:103632371-103632372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103630411..103632954-chr8:103639327..103641054,2	MCF-7	breast:
2	chr8:103623532..103635312-chr8:103817499..103824242,24	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10955288	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12548858	0.83[AFR][1000 genomes]
rs12549399	0.83[AFR][1000 genomes]
rs12674767	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12675196	0.81[ASN][1000 genomes]
rs12675239	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12680908	0.83[AFR][1000 genomes]
rs1318752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16869664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16869724	0.83[AFR][1000 genomes]
rs2053128	0.87[ASN][1000 genomes]
rs2388192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511701	0.83[AFR][1000 genomes]
rs2513924	0.83[AFR][1000 genomes]
rs35509459	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55750587	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55814340	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56398883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56929055	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60320584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72683098	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72683100	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72683101	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72683102	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72685104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72685109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72685110	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9642791	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9642792	0.90[ASN][1000 genomes]
rs9642979	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103629000-103634000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:103630000-103633800	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:103630200-103635400	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:103630400-103632800	Weak transcription	Primary B cells from cord blood	blood
6	chr8:103630400-103635800	Weak transcription	GM12878-XiMat	blood
7	chr8:103631800-103635400	Enhancers	Placenta	Placenta

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