Variant report

Variant	rs16869664
Chromosome Location	chr8:103636094-103636095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103611028..103613116-chr8:103635712..103638657,2	K562	blood:
2	chr8:103635452..103642989-chr8:103815632..103824530,15	MCF-7	breast:
3	chr8:103634893..103636918-chr8:103821409..103822917,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10955288	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12544257	0.88[CEU][hapmap]
rs12546601	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs12547834	1.00[CEU][hapmap]
rs12548858	0.83[AFR][1000 genomes]
rs12549399	0.83[AFR][1000 genomes]
rs12674767	0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12675196	0.81[ASN][1000 genomes]
rs12675239	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12680908	0.89[CEU][hapmap];0.83[AFR][1000 genomes]
rs1318752	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16869676	0.87[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs16869695	0.91[CHB][hapmap]
rs16869724	0.88[CEU][hapmap];0.81[JPT][hapmap];0.83[AFR][1000 genomes]
rs2053128	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs2388192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511701	0.88[CEU][hapmap];0.83[AFR][1000 genomes]
rs2511718	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs2513924	0.83[AFR][1000 genomes]
rs35509459	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55750587	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55814340	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56398883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56929055	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60320584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72683098	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72683100	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72683101	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72683102	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72685103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72685104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72685109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72685110	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9642791	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9642792	0.91[ASN][1000 genomes]
rs9642979	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs965660	0.80[CEU][hapmap]
rs980112	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103634200-103639600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
4	chr8:103635600-103639600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:103635800-103636200	Enhancers	GM12878-XiMat	blood
6	chr8:103635800-103639400	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:103636000-103636200	Enhancers	Placenta	Placenta

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