Variant report

Variant	rs9642979
Chromosome Location	chr8:103622296-103622297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103622288..103624110-chr8:103624252..103626001,2	MCF-7	breast:
2	chr8:103620698..103622905-chr8:103819199..103821152,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10109916	1.00[YRI][hapmap]
rs10955288	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12544257	0.88[CEU][hapmap]
rs12546601	0.88[CEU][hapmap];0.96[CHB][hapmap]
rs12547834	1.00[CEU][hapmap]
rs12674767	0.85[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12680908	0.89[CEU][hapmap]
rs1318752	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869664	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869676	0.87[CEU][hapmap];0.95[CHB][hapmap]
rs16869695	0.91[CHB][hapmap]
rs16869724	0.88[CEU][hapmap]
rs2053128	0.96[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs2388192	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2511701	0.88[CEU][hapmap]
rs2511718	0.95[CHB][hapmap]
rs35509459	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55750587	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55814340	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56398883	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60320584	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72683098	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72683100	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72683101	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72683102	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72685103	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72685104	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72685109	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9642791	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9642792	0.87[ASN][1000 genomes]
rs965660	0.80[CEU][hapmap]
rs980112	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv2762761	chr8:103492356-103625244	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103621200-103622600	Weak transcription	Placenta	Placenta
2	chr8:103621800-103622400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:103621800-103622600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
4	chr8:103621800-103622600	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:103621800-103623000	Enhancers	Colon Smooth Muscle	Colon
6	chr8:103621800-103624400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:103622000-103622400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr8:103622000-103622400	ZNF genes & repeats	K562	blood
9	chr8:103622000-103622800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:103622000-103622800	Enhancers	Psoas Muscle	Psoas
11	chr8:103622000-103622800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr8:103622200-103622400	Enhancers	Stomach Smooth Muscle	stomach
13	chr8:103622200-103622400	Enhancers	HSMM	muscle
14	chr8:103622200-103623000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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