Variant report

Variant	rs16869745
Chromosome Location	chr6:33894568-33894569
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2274155	1.00[EUR][1000 genomes]
rs2477232	0.99[ASN][1000 genomes]
rs2477237	0.91[ASN][1000 genomes]
rs4711368	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57423367	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59880244	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs732673	0.80[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33886600-33894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:33892200-33895600	Enhancers	Brain Germinal Matrix	brain
3	chr6:33893000-33895200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:33893200-33897600	Weak transcription	Fetal Lung	lung
5	chr6:33893600-33895800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:33893800-33894600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:33894000-33894600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:33894000-33895000	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:33894000-33895000	Weak transcription	Ovary	ovary
10	chr6:33894000-33895200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:33894000-33895400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:33894200-33895200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:33894400-33894600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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